FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6899-RB through 18771 annotations produced 2 hits

Protein tyrosine phosphatase 4E (Ptp4E):

Annotation Number : CG6899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004368
Gbrowse : chrX:4833164-4848123 (+) // 99.74 //
Probeset : 1631741_a_at
Accessions : protein= NP_001162669; /// NP_001162670; /// NP_001162671; /// NP_001162672; /// NP_525076; /// NP_726967;, nucleotide= NM_001169198; /// NM_001169199; /// NM_001169200; /// NM_001169201; /// NM_080337; /// NM_167024;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // i
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004368.
BDGP gene expression has embryonic in situ data for Ptp4E: 17 pix of staining in 11 body parts.
Homophila reports that CG6899 is a close match (9e-11) to human gene PTPRJ;DEP1 (NP_001091973), a gene associated with Colon cancer, somatic, 114500 (3).
BioGrid reports that CG6899 interacts with CG6912 .
TRiP has 1 RNAi stocks for FBgn0004368 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004368 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	58 ± 1	4 of 4	1.60	None
Head	45 ± 3	4 of 4	1.20	None
Eye	61 ± 6	4 of 4	1.65	Up
Thoracicoabdominal ganglion	28 ± 0	2 of 4	0.80	None
Salivary gland	68 ± 2	4 of 4	1.83	Up
Crop	43 ± 2	4 of 4	1.20	None
Midgut	14 ± 1	0 of 4	0.40	Down
Tubule	8 ± 2	0 of 4	0.20	Down
Hindgut	170 ± 7	4 of 4	4.60	Up
Heart	24 ± 2	4 of 4	0.66	Down
Fat body	34 ± 6	4 of 4	0.93	None
Ovary	42 ± 1	4 of 4	1.10	None
Testis	17 ± 2	4 of 4	0.50	Down
Male accessory glands	19 ± 3	2 of 4	0.50	Down
Virgin spermatheca	10 ± 2	0 of 4	0.28	Down
Mated spermatheca	10 ± 2	0 of 4	0.29	Down
Adult carcass	56 ± 11	4 of 4	1.50	None
Larval CNS	29 ± 4	4 of 4	0.78	None
Larval Salivary gland	20 ± 1	4 of 4	0.55	Down
Larval midgut	17 ± 1	2 of 4	0.48	Down
Larval tubule	12 ± 1	0 of 4	0.30	Down
Larval hindgut	135 ± 5	4 of 4	3.62	Up
Larval fat body	12 ± 2	0 of 4	0.30	Down
Larval trachea	124 ± 4	4 of 4	3.33	Up
Larval carcass	88 ± 5	4 of 4	2.36	Up
S2 cells (growing)	51 ± 4	4 of 4	1.37	Up
Whole fly	37 ± 3	4 of 4

Protein tyrosine phosphatase 4E (Ptp4E):

Annotation Number : CG6899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004368
Gbrowse : chrX:4833164-4848123 (+) // 99.74 //
Probeset : 1627599_at
Accessions : protein= NP_001162669; /// NP_001162670; /// NP_001162671; /// NP_001162672; /// NP_525076; /// NP_726967;, nucleotide= NM_001169198; /// NM_001169199; /// NM_001169200; /// NM_001169201; /// NM_080337; /// NM_167024;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // i
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004368.
BDGP gene expression has embryonic in situ data for Ptp4E: 17 pix of staining in 11 body parts.
Homophila reports that CG6899 is a close match (9e-11) to human gene PTPRJ;DEP1 (NP_001091973), a gene associated with Colon cancer, somatic, 114500 (3).
BioGrid reports that CG6899 interacts with CG6912 .
TRiP has 1 RNAi stocks for FBgn0004368 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004368 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	99 ± 9	4 of 4	11.20	Up
Head	13 ± 1	4 of 4	1.60	None
Eye	75 ± 10	4 of 4	8.55	Up
Thoracicoabdominal ganglion	41 ± 4	4 of 4	4.80	Up
Salivary gland	13 ± 5	2 of 4	1.54	None
Crop	13 ± 1	4 of 4	1.60	Up
Midgut	7 ± 1	1 of 4	0.80	None
Tubule	9 ± 0	2 of 4	1.00	None
Hindgut	41 ± 2	4 of 4	4.70	Up
Heart	25 ± 0	4 of 4	2.95	Up
Fat body	24 ± 6	4 of 4	2.78	Up
Ovary	4 ± 0	1 of 4	0.50	Down
Testis	5 ± 1	2 of 4	0.60	None
Male accessory glands	11 ± 1	3 of 4	1.30	None
Virgin spermatheca	30 ± 2	4 of 4	3.51	Up
Mated spermatheca	40 ± 7	4 of 4	4.64	Up
Adult carcass	19 ± 1	4 of 4	2.20	Up
Larval CNS	19 ± 2	4 of 4	2.19	Up
Larval Salivary gland	10 ± 0	4 of 4	1.18	Up
Larval midgut	9 ± 1	1 of 4	1.11	None
Larval tubule	9 ± 1	4 of 4	1.10	None
Larval hindgut	22 ± 2	4 of 4	2.51	Up
Larval fat body	13 ± 2	2 of 4	1.50	None
Larval trachea	63 ± 8	4 of 4	7.27	Up
Larval carcass	9 ± 0	4 of 4	1.11	None
S2 cells (growing)	11 ± 0	4 of 4	1.29	Up
Whole fly	8 ± 0	4 of 4

Looking for CG6899-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720