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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6907-RA through 18771 annotations produced 1 hits



(CG6907):

Annotation Number : CG6907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031711
Gbrowse : chr2L:5524138-5525809 (+) // 100.0 //
Probeset : 1641683_at
Accessions : protein= NP_608932;, nucleotide= NM_135088;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structur
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008607 // phosphorylase kinase regulator activity
FlyMine data for FBgn0031711.
BDGP gene expression has embryonic in situ data for CG6907: 8 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0031711 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031711 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 14 of 4 0.30Down
Head114 54 of 4 0.40Down
Eye77 44 of 4 0.28Down
Thoracicoabdominal ganglion111 24 of 4 0.40Down
Salivary gland220 114 of 4 0.79Down
Crop208 34 of 4 0.70Down
Midgut268 34 of 4 1.00None
Tubule199 124 of 4 0.70Down
Hindgut190 104 of 4 0.70Down
Heart144 64 of 4 0.52Down
Fat body160 74 of 4 0.57Down
Ovary439 44 of 4 1.60Up
Testis578 214 of 4 2.10Up
Male accessory glands354 94 of 4 1.30Up
Virgin spermatheca197 84 of 4 0.71Down
Mated spermatheca185 114 of 4 0.66Down
Adult carcass159 94 of 4 0.60Down
Larval CNS299 134 of 4 1.07None
Larval Salivary gland316 54 of 4 1.13None
Larval midgut218 54 of 4 0.78Down
Larval tubule321 44 of 4 1.20None
Larval hindgut209 64 of 4 0.75Down
Larval fat body314 174 of 4 1.10None
Larval trachea251 114 of 4 0.90None
Larval carcass199 44 of 4 0.71Down
S2 cells (growing)563 194 of 4 2.02Up
Whole fly279 164 of 4

Looking for CG6907-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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