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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6914-RA through 18771 annotations produced 1 hits



NADH:ubiquinone oxidoreductase B14.5A subunit (CG6914):

Annotation Number : CG6914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037172
Gbrowse : chr3L:22599468-22600230 (+) // 100.0 //
Probeset : 1630323_at
Accessions : protein= NP_649399;, nucleotide= NM_141142;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory
Interpro : 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from sequence or structural similarity /// 0008137 // NA
FlyMine data for FBgn0037172.
BDGP gene expression has embryonic in situ data for CG6914: 2 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037172 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.10Down
Head6 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.10Down
Crop4 ± 00 of 4 0.10Down
Midgut7 ± 31 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut9 ± 23 of 4 0.10Down
Heart2 ± 00 of 4 0.03Down
Fat body10 ± 12 of 4 0.15Down
Ovary3 ± 01 of 4 0.10Down
Testis755 ± 464 of 410.80Up
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca4 ± 20 of 4 0.07Down
Adult carcass16 ± 42 of 4 0.20Down
Larval CNS5 ± 14 of 4 0.08Down
Larval Salivary gland6 ± 11 of 4 0.09Down
Larval midgut10 ± 10 of 4 0.15Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut8 ± 14 of 4 0.13Down
Larval fat body61 ± 224 of 4 0.90None
Larval trachea9 ± 31 of 4 0.13Down
Larval carcass12 ± 03 of 4 0.17Down
S2 cells (growing)5 ± 12 of 4 0.08Down
Whole fly69 ± 34 of 4

Looking for CG6914-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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