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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6927-RA through 18771 annotations produced 1 hits



(CG6927):

Annotation Number : CG6927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029733
Gbrowse : chrX:4800944-4802854 (+) // 100.0 //
Probeset : 1637003_at
Accessions : protein= NP_572194;, nucleotide= NM_131966;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion cha
FlyMine data for FBgn0029733.
Homophila reports that CG6927 is a close match (3e-22) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944493), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
TRiP has 1 RNAi stocks for FBgn0029733 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 11 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye5 ± 20 of 4 0.03Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland20 ± 31 of 4 0.09Down
Crop9 ± 20 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule8 ± 30 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart9 ± 13 of 4 0.04Down
Fat body14 ± 73 of 4 0.06Down
Ovary589 ± 64 of 4 2.60Up
Testis1 ± 00 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca9 ± 21 of 4 0.04Down
Mated spermatheca10 ± 23 of 4 0.04Down
Adult carcass19 ± 41 of 4 0.10Down
Larval CNS5 ± 21 of 4 0.03Down
Larval Salivary gland9 ± 21 of 4 0.04Down
Larval midgut7 ± 10 of 4 0.03Down
Larval tubule8 ± 30 of 4 0.00Down
Larval hindgut10 ± 12 of 4 0.04Down
Larval fat body10 ± 11 of 4 0.00Down
Larval trachea7 ± 20 of 4 0.04Down
Larval carcass6 ± 10 of 4 0.03Down
S2 cells (growing)4 ± 00 of 4 0.02Down
Whole fly226 ± 84 of 4

Looking for CG6927-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime