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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6932-RA through 18771 annotations produced 1 hits



Drosophila COP9 signalosome homolog 6 (CSN6):

Annotation Number : CG6932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028837
Gbrowse : chr3R:18406496-18407760 (+) // 100.0 //
Probeset : 1636446_at
Accessions : protein= NP_524451;, nucleotide= NM_079727;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0019781 // NEDD8 activating enzyme activity // infe
FlyMine data for FBgn0028837.
BDGP gene expression has embryonic in situ data for CSN6: 10 pix of staining in 15 body parts.
BioGrid reports that CG6932 interacts with CG8725 .
TRiP has 1 RNAi stocks for FBgn0028837 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 44 of 4 0.70Down
Head90 44 of 4 0.60Down
Eye166 94 of 4 1.19None
Thoracicoabdominal ganglion96 24 of 4 0.70Down
Salivary gland64 72 of 4 0.46Down
Crop115 144 of 4 0.80None
Midgut98 44 of 4 0.70Down
Tubule121 54 of 4 0.90Down
Hindgut91 34 of 4 0.70Down
Heart115 74 of 4 0.82Down
Fat body114 174 of 4 0.82None
Ovary240 84 of 4 1.70Up
Testis114 64 of 4 0.80Down
Male accessory glands80 54 of 4 0.60Down
Virgin spermatheca136 64 of 4 0.98None
Mated spermatheca110 104 of 4 0.79None
Adult carcass103 54 of 4 0.70Down
Larval CNS261 94 of 4 1.87Up
Larval Salivary gland158 54 of 4 1.13None
Larval midgut107 34 of 4 0.77Down
Larval tubule175 24 of 4 1.30Up
Larval hindgut124 64 of 4 0.89None
Larval fat body164 104 of 4 1.20None
Larval trachea174 184 of 4 1.25Up
Larval carcass143 74 of 4 1.03None
S2 cells (growing)230 54 of 4 1.65Up
Whole fly139 64 of 4

Looking for CG6932-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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