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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6939-RA through 18771 annotations produced 1 hits

SET domain binding factor (Sbf):

Annotation Number : CG6939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025802
Gbrowse : chr3R:7615018-7622157 (-) // 100.0 //
Probeset : 1625187_a_at
Accessions : protein= NP_477401; /// NP_731633;, nucleotide= NM_058053; /// NM_169430;
Interpro : 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0025802.
Homophila reports that CG6939 is a close match (4e-32) to human gene CMT4B1;MTMR2 (NP_057240), a gene associated with Charcot-Marie-Tooth disease, type 4B1, 601382 (3).
TRiP has 1 RNAi stocks for FBgn0025802 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025802 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 94 of 4 2.40Up
Head191 104 of 4 1.30None
Eye112 84 of 4 0.74None
Thoracicoabdominal ganglion388 54 of 4 2.60Up
Salivary gland156 84 of 4 1.03None
Crop164 44 of 4 1.10None
Midgut99 24 of 4 0.70Down
Tubule181 44 of 4 1.20Up
Hindgut115 04 of 4 0.80None
Heart144 24 of 4 0.96None
Fat body164 74 of 4 1.09None
Ovary232 44 of 4 1.50Up
Testis174 84 of 4 1.10None
Male accessory glands178 94 of 4 1.20None
Virgin spermatheca151 154 of 4 1.00None
Mated spermatheca158 54 of 4 1.04None
Adult carcass120 44 of 4 0.80None
Larval CNS277 84 of 4 1.83Up
Larval Salivary gland151 114 of 4 1.00None
Larval midgut164 144 of 4 1.09None
Larval tubule271 104 of 4 1.80Up
Larval hindgut176 44 of 4 1.16None
Larval fat body160 94 of 4 1.10None
Larval trachea228 244 of 4 1.51Up
Larval carcass191 34 of 4 1.26None
S2 cells (growing)200 64 of 4 1.33Up
Whole fly151 144 of 4

Looking for CG6939-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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