FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6939-RA through 18771 annotations produced 1 hits

SET domain binding factor (Sbf):

Annotation Number : CG6939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025802
Gbrowse : chr3R:7615018-7622157 (-) // 100.0 //
Probeset : 1625187_a_at
Accessions : protein= NP_477401; /// NP_731633;, nucleotide= NM_058053; /// NM_169430;
Interpro : 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0025802.
Homophila reports that CG6939 is a close match (4e-32) to human gene CMT4B1;MTMR2 (NP_057240), a gene associated with Charcot-Marie-Tooth disease, type 4B1, 601382 (3).
TRiP has 1 RNAi stocks for FBgn0025802 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025802 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	366 ± 9	4 of 4	2.40	Up
Head	191 ± 10	4 of 4	1.30	None
Eye	112 ± 8	4 of 4	0.74	None
Thoracicoabdominal ganglion	388 ± 5	4 of 4	2.60	Up
Salivary gland	156 ± 8	4 of 4	1.03	None
Crop	164 ± 4	4 of 4	1.10	None
Midgut	99 ± 2	4 of 4	0.70	Down
Tubule	181 ± 4	4 of 4	1.20	Up
Hindgut	115 ± 0	4 of 4	0.80	None
Heart	144 ± 2	4 of 4	0.96	None
Fat body	164 ± 7	4 of 4	1.09	None
Ovary	232 ± 4	4 of 4	1.50	Up
Testis	174 ± 8	4 of 4	1.10	None
Male accessory glands	178 ± 9	4 of 4	1.20	None
Virgin spermatheca	151 ± 15	4 of 4	1.00	None
Mated spermatheca	158 ± 5	4 of 4	1.04	None
Adult carcass	120 ± 4	4 of 4	0.80	None
Larval CNS	277 ± 8	4 of 4	1.83	Up
Larval Salivary gland	151 ± 11	4 of 4	1.00	None
Larval midgut	164 ± 14	4 of 4	1.09	None
Larval tubule	271 ± 10	4 of 4	1.80	Up
Larval hindgut	176 ± 4	4 of 4	1.16	None
Larval fat body	160 ± 9	4 of 4	1.10	None
Larval trachea	228 ± 24	4 of 4	1.51	Up
Larval carcass	191 ± 3	4 of 4	1.26	None
S2 cells (growing)	200 ± 6	4 of 4	1.33	Up
Whole fly	151 ± 14	4 of 4

Looking for CG6939-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720