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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6944-RA through 18771 annotations produced 1 hits



chr2L:5542526-5546642 (+) // 100.0 // (Lamin):

Annotation Number : CG6944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636809_at
Accessions : protein= , nucleotide= NP_476616;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0006342 // chromatin silencing // inferred
Interpro : open tracheal system // inferred from mutant phenotype /// 0035262 // gonad morphogenesis // inferred from mutant pheno
FlyMine data for full length.
Homophila reports that CG6944 is a close match (4e-15) to human gene KRT10 (NP_000412), a gene associated with Epidermolytic hyperkeratosis, 113800 (3);Ichthyosis, cyclic, with epidermolytic hyperkeratosis, 607602 (3);Nevus, epidermal, epidermolytic hyperkeratotic type, 600648 (3).
BioGrid reports that CG6944 interacts with CG7069 CG7196 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 34 of 4 1.70Up
Head104 74 of 4 0.60Down
Eye203 64 of 4 1.27Up
Thoracicoabdominal ganglion218 64 of 4 1.40Up
Salivary gland32 62 of 4 0.20Down
Crop124 64 of 4 0.80Down
Midgut51 74 of 4 0.30Down
Tubule63 44 of 4 0.40Down
Hindgut48 44 of 4 0.30Down
Heart140 44 of 4 0.87None
Fat body68 214 of 4 0.43Down
Ovary228 114 of 4 1.40Up
Testis222 194 of 4 1.40Up
Male accessory glands262 74 of 4 1.60Up
Virgin spermatheca85 54 of 4 0.53Down
Mated spermatheca118 54 of 4 0.74Down
Adult carcass67 64 of 4 0.40Down
Larval CNS1501 684 of 4 9.36Up
Larval Salivary gland142 74 of 4 0.89None
Larval midgut95 44 of 4 0.59Down
Larval tubule47 84 of 4 0.30Down
Larval hindgut110 94 of 4 0.69Down
Larval fat body70 124 of 4 0.40Down
Larval trachea504 374 of 4 3.14Up
Larval carcass134 54 of 4 0.83Down
S2 cells (growing)940 424 of 4 5.86Up
Whole fly160 84 of 4

Looking for CG6944-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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