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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6950-RC through 18771 annotations produced 1 hits



(CG6950):

Annotation Number : CG6950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037955
Gbrowse : chr3R:7646102-7648210 (-) // 100.0 //
Probeset : 1633885_s_at
Accessions : protein= NP_650121; /// NP_731643; /// NP_731644; /// NP_788640;, nucleotide= NM_141864; /// NM_169437; /// NM_169438; /// NM_176463;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0037955.
Homophila reports that CG6950 is a close match (3e-16) to human gene TAT (NP_000344), a gene associated with Tyrosinemia, type II (3).
BioGrid reports that CG6950 interacts with CG7111 CG7352 CG8226 .
VDRC has 3 RNAi stocks for FBgn0037955 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 ± 44 of 4 0.50Down
Head365 ± 134 of 4 1.10None
Eye208 ± 114 of 4 0.63Down
Thoracicoabdominal ganglion176 ± 94 of 4 0.50Down
Salivary gland255 ± 124 of 4 0.77Down
Crop203 ± 104 of 4 0.60Down
Midgut320 ± 124 of 4 1.00None
Tubule1838 ± 844 of 4 5.60Up
Hindgut304 ± 134 of 4 0.90None
Heart582 ± 194 of 4 1.76Up
Fat body788 ± 564 of 4 2.39Up
Ovary232 ± 64 of 4 0.70Down
Testis72 ± 34 of 4 0.20Down
Male accessory glands254 ± 134 of 4 0.80Down
Virgin spermatheca417 ± 124 of 4 1.26Up
Mated spermatheca404 ± 94 of 4 1.22Up
Adult carcass574 ± 204 of 4 1.70Up
Larval CNS171 ± 114 of 4 0.52Down
Larval Salivary gland282 ± 74 of 4 0.86None
Larval midgut309 ± 34 of 4 0.94None
Larval tubule396 ± 114 of 4 1.20Up
Larval hindgut270 ± 104 of 4 0.82Down
Larval fat body199 ± 194 of 4 0.60Down
Larval trachea192 ± 64 of 4 0.58Down
Larval carcass317 ± 224 of 4 0.96None
S2 cells (growing)207 ± 74 of 4 0.63Down
Whole fly330 ± 184 of 4

Looking for CG6950-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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