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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6957-RA through 18771 annotations produced 1 hits



Oscillin (Oscillin):

Annotation Number : CG6957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031717
Gbrowse : chr2L:5547202-5549614 (+) // 100.0 //
Probeset : 1628828_s_at
Accessions : protein= NP_608938; /// NP_723092;, nucleotide= NM_135094; /// NM_164649;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0004342 // glucosamine-6-phosphate deaminase activity // inferred from sequence or structural similarity /// 0004342 //
FlyMine data for FBgn0031717.
BDGP gene expression has embryonic in situ data for Oscillin: 24 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0031717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 24 of 4 2.10Up
Head98 54 of 4 2.20Up
Eye81 44 of 4 1.81Up
Thoracicoabdominal ganglion82 44 of 4 1.80Up
Salivary gland16 50 of 4 0.36Down
Crop107 74 of 4 2.40Up
Midgut97 24 of 4 2.20Up
Tubule544 294 of 412.10Up
Hindgut65 24 of 4 1.50Up
Heart137 54 of 4 3.04Up
Fat body147 204 of 4 3.26Up
Ovary12 10 of 4 0.30Down
Testis99 34 of 4 2.20Up
Male accessory glands7 30 of 4 0.20Down
Virgin spermatheca323 264 of 4 7.16Up
Mated spermatheca245 354 of 4 5.44Up
Adult carcass97 44 of 4 2.20Up
Larval CNS81 164 of 4 1.80Up
Larval Salivary gland116 234 of 4 2.58None
Larval midgut250 174 of 4 5.55Up
Larval tubule1112 474 of 424.70Up
Larval hindgut117 104 of 4 2.60Up
Larval fat body1243 1564 of 427.60Up
Larval trachea140 234 of 4 3.11Up
Larval carcass229 474 of 4 5.09Up
S2 cells (growing)66 14 of 4 1.48Up
Whole fly45 24 of 4

Looking for CG6957-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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