Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6964-RA through 18771 annotations produced 1 hits



Atrophin (Gug):

Annotation Number : CG6964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010825
Gbrowse : chr3L:8443747-8465769 (+) // 100.0 //
Probeset : 1632497_a_at
Accessions : protein= NP_523973; /// NP_659574; /// NP_788478; /// NP_996025;, nucleotide= NM_079249; /// NM_145106; /// NM_176300; /// NM_206303;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005705 // polytene chromosome interband // inferred from direct as
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /
FlyMine data for FBgn0010825.
BDGP gene expression has embryonic in situ data for Gug: 4 pix of staining in 1 body parts.
BioGrid reports that CG6964 interacts with CG2328 CG9768 CG2759 .
TRiP has 1 RNAi stocks for FBgn0010825 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010825 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain467 134 of 4 4.90Up
Head139 24 of 4 1.50Up
Eye179 84 of 4 1.89Up
Thoracicoabdominal ganglion284 144 of 4 3.00Up
Salivary gland182 34 of 4 1.93Up
Crop229 94 of 4 2.40Up
Midgut168 84 of 4 1.80Up
Tubule329 94 of 4 3.50Up
Hindgut227 94 of 4 2.40Up
Heart150 54 of 4 1.59Up
Fat body187 124 of 4 1.97Up
Ovary91 24 of 4 1.00None
Testis31 14 of 4 0.30Down
Male accessory glands86 34 of 4 0.90None
Virgin spermatheca240 194 of 4 2.53Up
Mated spermatheca254 174 of 4 2.68Up
Adult carcass121 144 of 4 1.30None
Larval CNS630 834 of 4 6.64Up
Larval Salivary gland164 94 of 4 1.73Up
Larval midgut93 24 of 4 0.98None
Larval tubule239 144 of 4 2.50Up
Larval hindgut163 64 of 4 1.73Up
Larval fat body87 64 of 4 0.90None
Larval trachea244 264 of 4 2.58Up
Larval carcass140 44 of 4 1.48Up
S2 cells (growing)153 64 of 4 1.62Up
Whole fly94 64 of 4

Looking for CG6964-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime