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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6967-RA through 18771 annotations produced 1 hits



chr2R:12950281-12954049 (+) // 100.0 // ():

Annotation Number : CG6967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626228_a_at
Accessions : protein= , nucleotide= NP_611185; /// NP_725650;
Pathway : "0000184 // nuclear-transcribed mRNA catabolic process
Interpro : nonsense-mediated decay // inferred from sequence or structural similarity"
FlyMine data for full length.
Homophila reports that CG6967 is a close match (5e-19) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 04 of 4 0.10Down
Head22 ± 44 of 4 0.20Down
Eye11 ± 14 of 4 0.09Down
Thoracicoabdominal ganglion20 ± 34 of 4 0.20Down
Salivary gland39 ± 22 of 4 0.30Down
Crop48 ± 54 of 4 0.40Down
Midgut449 ± 394 of 4 3.40Up
Tubule11 ± 11 of 4 0.10Down
Hindgut46 ± 24 of 4 0.40Down
Heart8 ± 12 of 4 0.06Down
Fat body18 ± 53 of 4 0.14Down
Ovary358 ± 104 of 4 2.70Up
Testis7 ± 03 of 4 0.10Down
Male accessory glands13 ± 11 of 4 0.10Down
Virgin spermatheca14 ± 24 of 4 0.11Down
Mated spermatheca20 ± 14 of 4 0.16Down
Adult carcass21 ± 33 of 4 0.20Down
Larval CNS16 ± 14 of 4 0.13Down
Larval Salivary gland6 ± 01 of 4 0.05Down
Larval midgut12 ± 04 of 4 0.09Down
Larval tubule35 ± 34 of 4 0.30Down
Larval hindgut19 ± 04 of 4 0.15Down
Larval fat body27 ± 34 of 4 0.20Down
Larval trachea25 ± 54 of 4 0.19Down
Larval carcass31 ± 33 of 4 0.24Down
S2 cells (growing)22 ± 34 of 4 0.17Down
Whole fly130 ± 104 of 4

Looking for CG6967-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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