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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6976-RC through 18771 annotations produced 1 hits



myosin VII 28B1-B4 (Myo28B1):

Annotation Number : CG6976
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040299
Gbrowse : chr2L:7666046-7684544 (+) // 100.0 //
Probeset : 1629784_a_at
Accessions : protein= NP_001162902; /// NP_652630; /// NP_723294; /// NP_723295; /// NP_723296;, nucleotide= NM_001169431; /// NM_144373; /// NM_164758; /// NM_164759; /// NM_164760;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0040299.
Homophila reports that CG6976 is a close match (3e-112) to human gene MYH14;KIAA2034;DFNA4 (NP_001070654), a gene associated with Deafness, autosomal dominant 4, 600652 (3).
TRiP has 1 RNAi stocks for FBgn0040299 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 0.20Down
Head34 ± 34 of 4 1.10None
Eye145 ± 264 of 4 4.65Up
Thoracicoabdominal ganglion8 ± 01 of 4 0.30Down
Salivary gland20 ± 12 of 4 0.65Down
Crop11 ± 22 of 4 0.40Down
Midgut341 ± 74 of 410.90Up
Tubule47 ± 74 of 4 1.50Up
Hindgut37 ± 24 of 4 1.20None
Heart2 ± 10 of 4 0.08Down
Fat body5 ± 20 of 4 0.18Down
Ovary2 ± 00 of 4 0.10Down
Testis5 ± 03 of 4 0.20Down
Male accessory glands5 ± 00 of 4 0.20Down
Virgin spermatheca38 ± 24 of 4 1.22None
Mated spermatheca71 ± 84 of 4 2.28Up
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.09Down
Larval Salivary gland101 ± 124 of 4 3.24Up
Larval midgut273 ± 144 of 4 8.75Up
Larval tubule9 ± 21 of 4 0.30Down
Larval hindgut191 ± 344 of 4 6.14Up
Larval fat body17 ± 13 of 4 0.50Down
Larval trachea4 ± 21 of 4 0.13Down
Larval carcass2 ± 00 of 4 0.08Down
S2 cells (growing)28 ± 34 of 4 0.93None
Whole fly31 ± 24 of 4

Looking for CG6976-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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