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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6983-RA through 18771 annotations produced 1 hits



(CG6983):

Annotation Number : CG6983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035896
Gbrowse : chr3L:8436344-8442472 (-) // 100.0 //
Probeset : 1636643_at
Accessions : protein= NP_648227;, nucleotide= NM_139970;
FlyMine data for FBgn0035896.
VDRC has 3 RNAi stocks for FBgn0035896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 ± 94 of 4 1.90Up
Head470 ± 314 of 4 4.20Up
Eye1188 ± 1284 of 410.56Up
Thoracicoabdominal ganglion141 ± 144 of 4 1.30None
Salivary gland44 ± 64 of 4 0.40Down
Crop1095 ± 474 of 4 9.70Up
Midgut61 ± 14 of 4 0.50Down
Tubule173 ± 364 of 4 1.50None
Hindgut230 ± 174 of 4 2.00Up
Heart46 ± 84 of 4 0.42Down
Fat body14 ± 24 of 4 0.13Down
Ovary209 ± 84 of 4 1.90Up
Testis31 ± 24 of 4 0.30Down
Male accessory glands52 ± 14 of 4 0.50Down
Virgin spermatheca125 ± 244 of 4 1.11None
Mated spermatheca136 ± 134 of 4 1.21None
Adult carcass41 ± 44 of 4 0.40Down
Larval CNS222 ± 204 of 4 1.98Up
Larval Salivary gland26 ± 24 of 4 0.23Down
Larval midgut167 ± 144 of 4 1.49Up
Larval tubule162 ± 204 of 4 1.40None
Larval hindgut235 ± 184 of 4 2.10Up
Larval fat body15 ± 23 of 4 0.10Down
Larval trachea40 ± 124 of 4 0.36Down
Larval carcass68 ± 84 of 4 0.61Down
S2 cells (growing)76 ± 54 of 4 0.68None
Whole fly112 ± 144 of 4

Looking for CG6983-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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