FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6987-RA through 18771 annotations produced 1 hits

SF2 (SF2):

Annotation Number : CG6987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040284
Gbrowse : chr3R:12165848-12167706 (-) // 100.0 //
Probeset : 1634975_at
Accessions : protein= NP_652611;, nucleotide= NM_144354;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0040284.
BDGP gene expression has embryonic in situ data for SF2: 12 pix of staining in 9 body parts.
BioGrid reports that CG6987 interacts with CG9986 CG2848 .
TRiP has 2 RNAi stocks for FBgn0040284 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040284 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	556 ± 17	4 of 4	0.60	Down
Head	390 ± 15	4 of 4	0.40	Down
Eye	501 ± 16	4 of 4	0.56	Down
Thoracicoabdominal ganglion	323 ± 5	4 of 4	0.40	Down
Salivary gland	820 ± 35	4 of 4	0.91	None
Crop	519 ± 10	4 of 4	0.60	Down
Midgut	565 ± 15	4 of 4	0.60	Down
Tubule	498 ± 14	4 of 4	0.60	Down
Hindgut	562 ± 11	4 of 4	0.60	Down
Heart	414 ± 6	4 of 4	0.46	Down
Fat body	344 ± 35	4 of 4	0.38	Down
Ovary	1438 ± 36	4 of 4	1.60	Up
Testis	427 ± 11	4 of 4	0.50	Down
Male accessory glands	680 ± 31	4 of 4	0.80	Down
Virgin spermatheca	473 ± 9	4 of 4	0.53	Down
Mated spermatheca	578 ± 31	4 of 4	0.64	Down
Adult carcass	351 ± 22	4 of 4	0.40	Down
Larval CNS	1390 ± 48	4 of 4	1.54	Up
Larval Salivary gland	1197 ± 34	4 of 4	1.33	Up
Larval midgut	497 ± 4	4 of 4	0.55	Down
Larval tubule	729 ± 45	4 of 4	0.80	Down
Larval hindgut	695 ± 5	4 of 4	0.77	Down
Larval fat body	817 ± 54	4 of 4	0.90	None
Larval trachea	1368 ± 53	4 of 4	1.52	Up
Larval carcass	752 ± 28	4 of 4	0.83	Down
S2 cells (growing)	1245 ± 14	4 of 4	1.38	Up
Whole fly	902 ± 17	4 of 4

Looking for CG6987-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720