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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6988-RA through 18771 annotations produced 1 hits



protein disulfide isomerase (Pdi):

Annotation Number : CG6988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014002
Gbrowse : chr3L:15130429-15135745 (-) // 100.0 //
Probeset : 1637933_a_at
Accessions : protein= NP_524079; /// NP_730033;, nucleotide= NM_079355; /// NM_168614;
Pathway : 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0014002.
BDGP gene expression has embryonic in situ data for Pdi: 15 pix of staining in 10 body parts.
BioGrid reports that CG6988 interacts with CG3978 .
TRiP has 1 RNAi stocks for FBgn0014002 available for purchase.
VDRC has 2 RNAi stocks for FBgn0014002 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 02 of 4 1.20None
Head6 04 of 4 1.90None
Eye1 00 of 4 0.40None
Thoracicoabdominal ganglion4 11 of 4 1.30None
Salivary gland16 33 of 4 5.01Up
Crop8 21 of 4 2.50None
Midgut5 11 of 4 1.70None
Tubule6 01 of 4 1.80Up
Hindgut4 03 of 4 1.30None
Heart2 10 of 4 0.88None
Fat body10 24 of 4 3.15Up
Ovary2 02 of 4 0.90None
Testis2 00 of 4 0.60None
Male accessory glands34 54 of 410.50Up
Virgin spermatheca15 14 of 4 4.64Up
Mated spermatheca13 14 of 4 4.02Up
Adult carcass9 22 of 4 2.80None
Larval CNS2 12 of 4 0.86None
Larval Salivary gland19 14 of 4 6.06Up
Larval midgut4 03 of 4 1.51None
Larval tubule6 12 of 4 2.10None
Larval hindgut5 03 of 4 1.73None
Larval fat body7 12 of 4 2.30None
Larval trachea1 10 of 4 0.51None
Larval carcass5 12 of 4 1.65None
S2 cells (growing)3 01 of 4 1.01None
Whole fly3 11 of 4

Looking for CG6988-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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