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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6990-RA through 18771 annotations produced 1 hits



HP1c (HP1c):

Annotation Number : CG6990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039019
Gbrowse : chr3R:18571349-18572327 (+) // 100.0 //
Probeset : 1629470_at
Accessions : protein= NP_651093;, nucleotide= NM_142836;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // infe
FlyMine data for FBgn0039019.
BDGP gene expression has embryonic in situ data for HP1c: 10 pix of staining in 7 body parts.
TRiP has 2 RNAi stocks for FBgn0039019 available for purchase.
VDRC has 4 RNAi stocks for FBgn0039019 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 54 of 4 0.90None
Head122 ± 24 of 4 0.60Down
Eye182 ± 244 of 4 0.95None
Thoracicoabdominal ganglion121 ± 34 of 4 0.60Down
Salivary gland127 ± 104 of 4 0.66Down
Crop115 ± 44 of 4 0.60Down
Midgut73 ± 44 of 4 0.40Down
Tubule109 ± 54 of 4 0.60Down
Hindgut112 ± 14 of 4 0.60Down
Heart50 ± 54 of 4 0.27Down
Fat body54 ± 34 of 4 0.29Down
Ovary293 ± 94 of 4 1.50Up
Testis147 ± 84 of 4 0.80Down
Male accessory glands211 ± 84 of 4 1.10None
Virgin spermatheca109 ± 34 of 4 0.57Down
Mated spermatheca126 ± 54 of 4 0.66Down
Adult carcass73 ± 34 of 4 0.40Down
Larval CNS309 ± 144 of 4 1.62Up
Larval Salivary gland160 ± 74 of 4 0.84Down
Larval midgut56 ± 14 of 4 0.30Down
Larval tubule101 ± 34 of 4 0.50Down
Larval hindgut86 ± 24 of 4 0.45Down
Larval fat body138 ± 74 of 4 0.70Down
Larval trachea153 ± 114 of 4 0.80Down
Larval carcass85 ± 24 of 4 0.45Down
S2 cells (growing)219 ± 54 of 4 1.15Up
Whole fly191 ± 84 of 4

Looking for CG6990-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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