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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6993-RA through 18771 annotations produced 1 hits



spineless-aristapedia (ss):

Annotation Number : CG6993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003513
Gbrowse : chr3R:12200149-12229405 (-) // 100.0 //
Probeset : 1625198_at
Accessions : protein= NP_001163629; /// NP_476748;, nucleotide= NM_001170158; /// NM_057400;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // no
FlyMine data for FBgn0003513.
BDGP gene expression has embryonic in situ data for ss: 16 pix of staining in 4 body parts.
Homophila reports that CG6993 is a close match (6e-26) to human gene ECYT4;EPAS1;HIF2A;MOP2 (NP_001421), a gene associated with Erythrocytosis, familial, 4, 611783 (3).
BioGrid reports that CG6993 interacts with CG32443 CG11849 CG14792 CG8651 .
TRiP has 2 RNAi stocks for FBgn0003513 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 11 of 4 0.30None
Head37 ± 24 of 4 6.00Up
Eye13 ± 14 of 4 2.12Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland6 ± 31 of 4 0.96None
Crop6 ± 10 of 4 1.00None
Midgut2 ± 10 of 4 0.40None
Tubule1 ± 00 of 4 0.30Down
Hindgut2 ± 10 of 4 0.40None
Heart4 ± 11 of 4 0.75None
Fat body13 ± 34 of 4 2.18Up
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands6 ± 10 of 4 1.00None
Virgin spermatheca2 ± 10 of 4 0.45None
Mated spermatheca0 ± 00 of 4 0.13Down
Adult carcass18 ± 22 of 4 2.90Up
Larval CNS6 ± 14 of 4 1.10None
Larval Salivary gland3 ± 10 of 4 0.50None
Larval midgut1 ± 00 of 4 0.17Down
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut3 ± 01 of 4 0.49Down
Larval fat body2 ± 10 of 4 0.50None
Larval trachea3 ± 10 of 4 0.54Down
Larval carcass9 ± 12 of 4 1.56None
S2 cells (growing)1 ± 10 of 4 0.22Down
Whole fly6 ± 13 of 4

Looking for CG6993-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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