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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7004-RB through 18771 annotations produced 1 hits



four wheel drive (fwd):

Annotation Number : CG7004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004373
Gbrowse : chr3L:306206-319880 (-) // 100.0 //
Probeset : 1634509_s_at
Accessions : protein= NP_524822; /// NP_728518; /// NP_728519;, nucleotide= NM_080083; /// NM_167826; /// NM_167827;
Interpro : "0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004430 // 1-pho
FlyMine data for FBgn0004373.
Homophila reports that CG7004 is a close match (2e-27) to human gene PIK3CA (NP_006209), a gene associated with Breast cancer, somatic, 114480 (3);Colorectal cancer, somatic, 114500 (3);Gastric cancer, somatic, 137215 (3);Hepatocellular carcinoma, somatic, 114550 (3);Keratosis, seborrheic, somatic, 182000 (3);Nevus, epidermal, 162900 (3);Nonsmall cell lung cancer, somatic, 211980 (3);Ovarian cancer, somatic, 604370 (3).
TRiP has 3 RNAi stocks for FBgn0004373 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 ± 114 of 4 2.30Up
Head129 ± 44 of 4 1.00None
Eye249 ± 144 of 4 1.92Up
Thoracicoabdominal ganglion232 ± 214 of 4 1.80Up
Salivary gland159 ± 204 of 4 1.23None
Crop309 ± 214 of 4 2.40Up
Midgut139 ± 24 of 4 1.10None
Tubule115 ± 74 of 4 0.90None
Hindgut297 ± 164 of 4 2.30Up
Heart129 ± 94 of 4 1.00None
Fat body187 ± 454 of 4 1.44None
Ovary241 ± 24 of 4 1.90Up
Testis420 ± 164 of 4 3.20Up
Male accessory glands183 ± 24 of 4 1.40Up
Virgin spermatheca75 ± 54 of 4 0.58Down
Mated spermatheca101 ± 64 of 4 0.78Down
Adult carcass104 ± 124 of 4 0.80None
Larval CNS208 ± 214 of 4 1.61Up
Larval Salivary gland138 ± 54 of 4 1.07None
Larval midgut103 ± 54 of 4 0.80Down
Larval tubule148 ± 74 of 4 1.10None
Larval hindgut190 ± 104 of 4 1.47Up
Larval fat body180 ± 204 of 4 1.40None
Larval trachea116 ± 114 of 4 0.90None
Larval carcass98 ± 24 of 4 0.76Down
S2 cells (growing)158 ± 54 of 4 1.22Up
Whole fly129 ± 54 of 4

Looking for CG7004-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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