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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7005-RA through 18771 annotations produced 1 hits



Epidermal stripes and patches (Esp):

Annotation Number : CG7005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013953
Gbrowse : chr3R:20672735-20676142 (+) // 100.0 //
Probeset : 1637292_at
Accessions : protein= NP_524490;, nucleotide= NM_079766;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmemb
FlyMine data for FBgn0013953.
BDGP gene expression has embryonic in situ data for Esp: 47 pix of staining in 21 body parts.
Homophila reports that CG7005 is a close match (1e-11) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 2 RNAi stocks for FBgn0013953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head69 ± 34 of 4 1.20None
Eye11 ± 22 of 4 0.19Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.06Down
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut94 ± 34 of 4 1.60Up
Heart3 ± 10 of 4 0.07Down
Fat body3 ± 40 of 4 0.06Down
Ovary52 ± 34 of 4 0.90None
Testis26 ± 14 of 4 0.50Down
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca96 ± 74 of 4 1.64Up
Mated spermatheca117 ± 94 of 4 2.01Up
Adult carcass34 ± 44 of 4 0.60Down
Larval CNS3 ± 20 of 4 0.06Down
Larval Salivary gland3 ± 10 of 4 0.06Down
Larval midgut40 ± 14 of 4 0.70Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut520 ± 684 of 4 8.89Up
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea52 ± 134 of 4 0.91None
Larval carcass42 ± 114 of 4 0.73None
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly58 ± 34 of 4

Looking for CG7005-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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