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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7007-RA through 18771 annotations produced 1 hits



V-ATPase proton pump (VhaPPA1-1):

Annotation Number : CG7007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028662
Gbrowse : chr3R:10728047-10729796 (-) // 100.0 //
Probeset : 1637024_at
Accessions : protein= NP_652010;, nucleotide= NM_143753;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annota
FlyMine data for FBgn0028662.
VDRC has 4 RNAi stocks for FBgn0028662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1603 424 of 4 1.40Up
Head1132 844 of 4 1.00None
Eye1415 324 of 4 1.25Up
Thoracicoabdominal ganglion1639 384 of 4 1.50Up
Salivary gland8288 3424 of 4 7.33Up
Crop1107 174 of 4 1.00None
Midgut3673 424 of 4 3.20Up
Tubule5532 504 of 4 4.90Up
Hindgut4577 1054 of 4 4.00Up
Heart1124 514 of 4 0.99None
Fat body542 54 of 4 0.48Down
Ovary1128 134 of 4 1.00None
Testis493 94 of 4 0.40Down
Male accessory glands826 184 of 4 0.70Down
Virgin spermatheca768 194 of 4 0.68Down
Mated spermatheca859 534 of 4 0.76Down
Adult carcass809 534 of 4 0.70Down
Larval CNS997 944 of 4 0.88None
Larval Salivary gland3139 984 of 4 2.78Up
Larval midgut3796 584 of 4 3.36Up
Larval tubule4187 1614 of 4 3.70Up
Larval hindgut4511 434 of 4 3.99Up
Larval fat body1157 864 of 4 1.00None
Larval trachea2042 644 of 4 1.81Up
Larval carcass2148 404 of 4 1.90Up
S2 cells (growing)1764 94 of 4 1.56Up
Whole fly1130 674 of 4

Looking for CG7007-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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