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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7008-RA through 18771 annotations produced 1 hits



Tudor-SN (Tudor-SN):

Annotation Number : CG7008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035121
Gbrowse : chr3L:259285-264378 (-) // 100.0 //
Probeset : 1640241_at
Accessions : protein= NP_612021;, nucleotide= NM_138177;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activit
FlyMine data for FBgn0035121.
BDGP gene expression has embryonic in situ data for CG7008: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0035121 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 44 of 4 0.30Down
Head311 144 of 4 0.40Down
Eye201 94 of 4 0.25Down
Thoracicoabdominal ganglion206 54 of 4 0.30Down
Salivary gland1610 534 of 4 1.99Up
Crop459 124 of 4 0.60Down
Midgut753 314 of 4 0.90None
Tubule532 674 of 4 0.70Down
Hindgut365 124 of 4 0.50Down
Heart405 164 of 4 0.50Down
Fat body747 1584 of 4 0.92None
Ovary1305 404 of 4 1.60Up
Testis272 74 of 4 0.30Down
Male accessory glands1739 694 of 4 2.10Up
Virgin spermatheca452 144 of 4 0.56Down
Mated spermatheca689 554 of 4 0.85None
Adult carcass389 94 of 4 0.50Down
Larval CNS834 144 of 4 1.03None
Larval Salivary gland3011 1254 of 4 3.72Up
Larval midgut710 634 of 4 0.88None
Larval tubule818 214 of 4 1.00None
Larval hindgut929 804 of 4 1.15None
Larval fat body1061 1404 of 4 1.30None
Larval trachea1258 3374 of 4 1.55None
Larval carcass1355 1244 of 4 1.67Up
S2 cells (growing)1247 354 of 4 1.54Up
Whole fly809 464 of 4

Looking for CG7008-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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