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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7009-RA through 18771 annotations produced 1 hits



(CG7009):

Annotation Number : CG7009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038861
Gbrowse : chr3R:16958455-16959599 (-) // 100.0 //
Probeset : 1624669_at
Accessions : protein= NP_650947;, nucleotide= NM_142690;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // non-traceable author
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005338 // nucleotide-sugar transmembrane tra
FlyMine data for FBgn0038861.
Homophila reports that CG7009 is a close match (1e-64) to human gene FTSJ1;JM23;MRX44;MRX9;SPB1 (NP_803188), a gene associated with Mental retardation, X-linked-9, 309549 (3).
VDRC has 2 RNAi stocks for FBgn0038861 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 34 of 4 1.60Up
Head88 54 of 4 1.20None
Eye187 54 of 4 2.51Up
Thoracicoabdominal ganglion128 64 of 4 1.70Up
Salivary gland111 44 of 4 1.49Up
Crop75 54 of 4 1.00None
Midgut69 04 of 4 0.90None
Tubule48 14 of 4 0.60Down
Hindgut62 34 of 4 0.80None
Heart119 44 of 4 1.59Up
Fat body76 84 of 4 1.02None
Ovary81 14 of 4 1.10None
Testis46 44 of 4 0.60Down
Male accessory glands100 74 of 4 1.30Up
Virgin spermatheca97 34 of 4 1.30Up
Mated spermatheca84 44 of 4 1.13None
Adult carcass88 94 of 4 1.20None
Larval CNS97 14 of 4 1.30Up
Larval Salivary gland96 44 of 4 1.29Up
Larval midgut67 44 of 4 0.90None
Larval tubule90 24 of 4 1.20None
Larval hindgut71 44 of 4 0.95None
Larval fat body84 44 of 4 1.10None
Larval trachea158 124 of 4 2.13Up
Larval carcass101 14 of 4 1.36Up
S2 cells (growing)95 14 of 4 1.28Up
Whole fly74 54 of 4

Looking for CG7009-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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