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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7014-RA through 18771 annotations produced 1 hits



Ribosomal protein S5b (RpS5b):

Annotation Number : CG7014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038277
Gbrowse : chr3R:10726153-10727310 (-) // 100.0 //
Probeset : 1640104_at
Accessions : protein= NP_650407;, nucleotide= NM_142150;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0038277.
BDGP gene expression has embryonic in situ data for CG7014: 2 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0038277 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 10 of 4 0.00Down
Head11 ± 20 of 4 0.00Down
Eye7 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion26 ± 52 of 4 0.00Down
Salivary gland43 ± 111 of 4 0.02Down
Crop47 ± 54 of 4 0.00Down
Midgut20 ± 30 of 4 0.00Down
Tubule114 ± 960 of 4 0.00Down
Hindgut25 ± 50 of 4 0.00Down
Heart7 ± 21 of 4 0.00Down
Fat body119 ± 1102 of 4 0.04Down
Ovary2512 ± 684 of 4 0.90None
Testis502 ± 274 of 4 0.20Down
Male accessory glands16 ± 20 of 4 0.00Down
Virgin spermatheca103 ± 164 of 4 0.04Down
Mated spermatheca51 ± 154 of 4 0.02Down
Adult carcass229 ± 1134 of 4 0.10Down
Larval CNS96 ± 204 of 4 0.04Down
Larval Salivary gland14 ± 42 of 4 0.01Down
Larval midgut33 ± 83 of 4 0.01Down
Larval tubule9 ± 20 of 4 0.00Down
Larval hindgut24 ± 22 of 4 0.01Down
Larval fat body209 ± 304 of 4 0.10Down
Larval trachea4 ± 20 of 4 0.00Down
Larval carcass13 ± 21 of 4 0.00Down
S2 cells (growing)60 ± 44 of 4 0.02Down
Whole fly2658 ± 1394 of 4

Looking for CG7014-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime