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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7016-RA through 18771 annotations produced 1 hits



(CG7016):

Annotation Number : CG7016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039238
Gbrowse : chr3R:20688653-20689938 (+) // 100.0 //
Probeset : 1623352_at
Accessions : protein= NP_651301;, nucleotide= NM_143044;
FlyMine data for FBgn0039238.
BDGP gene expression has embryonic in situ data for CG7016: 10 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0039238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.20Down
Head442 ± 64 of 4 4.30Up
Eye333 ± 334 of 4 3.25Up
Thoracicoabdominal ganglion19 ± 33 of 4 0.20Down
Salivary gland21 ± 20 of 4 0.21Down
Crop522 ± 114 of 4 5.10Up
Midgut17 ± 11 of 4 0.20Down
Tubule13 ± 11 of 4 0.10Down
Hindgut188 ± 164 of 4 1.80Up
Heart165 ± 84 of 4 1.62Up
Fat body375 ± 364 of 4 3.66Up
Ovary2 ± 00 of 4 0.00Down
Testis4 ± 20 of 4 0.00Down
Male accessory glands77 ± 34 of 4 0.80Down
Virgin spermatheca453 ± 174 of 4 4.43Up
Mated spermatheca478 ± 334 of 4 4.67Up
Adult carcass332 ± 154 of 4 3.20Up
Larval CNS22 ± 34 of 4 0.22Down
Larval Salivary gland25 ± 24 of 4 0.25Down
Larval midgut16 ± 52 of 4 0.16Down
Larval tubule23 ± 33 of 4 0.20Down
Larval hindgut457 ± 294 of 4 4.47Up
Larval fat body864 ± 484 of 4 8.40Up
Larval trachea231 ± 554 of 4 2.26Up
Larval carcass307 ± 324 of 4 3.00Up
S2 cells (growing)12 ± 10 of 4 0.12Down
Whole fly102 ± 44 of 4

Looking for CG7016-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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