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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7023-RA through 18771 annotations produced 1 hits



(CG7023):

Annotation Number : CG7023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039025
Gbrowse : chr3R:18576613-18602098 (+) // 100.0 //
Probeset : 1639202_a_at
Accessions : protein= NP_651099;, nucleotide= NM_142842;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0039025.
BDGP gene expression has embryonic in situ data for CG7023: 24 pix of staining in 10 body parts.
Homophila reports that CG7023 is a close match (2e-14) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
VDRC has 3 RNAi stocks for FBgn0039025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 ± 14 of 4 1.10None
Head154 ± 84 of 4 1.20Up
Eye209 ± 164 of 4 1.66Up
Thoracicoabdominal ganglion163 ± 54 of 4 1.30Up
Salivary gland176 ± 44 of 4 1.40Up
Crop160 ± 64 of 4 1.30Up
Midgut93 ± 24 of 4 0.70Down
Tubule146 ± 34 of 4 1.20Up
Hindgut268 ± 64 of 4 2.10Up
Heart102 ± 74 of 4 0.81Down
Fat body87 ± 64 of 4 0.70Down
Ovary157 ± 44 of 4 1.30Up
Testis231 ± 64 of 4 1.80Up
Male accessory glands193 ± 104 of 4 1.50Up
Virgin spermatheca116 ± 44 of 4 0.93None
Mated spermatheca108 ± 54 of 4 0.86None
Adult carcass152 ± 94 of 4 1.20None
Larval CNS128 ± 124 of 4 1.02None
Larval Salivary gland86 ± 34 of 4 0.68Down
Larval midgut101 ± 44 of 4 0.80Down
Larval tubule191 ± 14 of 4 1.50Up
Larval hindgut131 ± 24 of 4 1.05None
Larval fat body82 ± 104 of 4 0.70Down
Larval trachea91 ± 94 of 4 0.73Down
Larval carcass92 ± 34 of 4 0.74Down
S2 cells (growing)117 ± 14 of 4 0.93None
Whole fly126 ± 54 of 4

Looking for CG7023-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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