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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7024-RA through 18771 annotations produced 1 hits


(CG7024):

Annotation Number : CG7024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029722
Gbrowse : chrX:4599341-4601537 (+) // 100.0 //
Probeset : 1629402_at
Accessions : protein= NP_572182;, nucleotide= NM_131954;
Pathway : 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045254 // pyruvate dehyd
Interpro : "0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0029722.
Homophila reports that CG7024 is a close match (1e-23) to human gene BCKDHA;MSUD1 (NP_000700), a gene associated with Maple syrup urine disease, type Ia, 248600 (3).
VDRC has 3 RNAi stocks for FBgn0029722 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.30Down
Head5 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion33 ± 14 of 4 0.60Down
Salivary gland9 ± 50 of 4 0.16Down
Crop5 ± 20 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule7 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.04Down
Fat body6 ± 20 of 4 0.12Down
Ovary1 ± 00 of 4 0.00Down
Testis571 ± 134 of 4 9.80Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 10 of 4 0.13Down
Mated spermatheca5 ± 10 of 4 0.09Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.08Down
Larval Salivary gland5 ± 10 of 4 0.09Down
Larval midgut6 ± 10 of 4 0.10Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.06Down
Larval fat body56 ± 211 of 4 1.00None
Larval trachea4 ± 40 of 4 0.08Down
Larval carcass3 ± 10 of 4 0.06Down
S2 cells (growing)2 ± 10 of 4 0.04Down
Whole fly58 ± 54 of 4

Looking for CG7024-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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