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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7033-RC through 18771 annotations produced 1 hits



(CG7033):

Annotation Number : CG7033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030086
Gbrowse : chrX:8983360-8986866 (+) // 100.0 //
Probeset : 1630408_s_at
Accessions : protein= NP_572524; /// NP_788888;, nucleotide= NM_132296; /// NM_176715;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0030086.
BDGP gene expression has embryonic in situ data for CG7033: 18 pix of staining in 13 body parts.
Homophila reports that CG7033 is a close match (1e-61) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
TRiP has 1 RNAi stocks for FBgn0030086 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain441 204 of 4 0.30Down
Head428 204 of 4 0.30Down
Eye220 64 of 4 0.14Down
Thoracicoabdominal ganglion634 94 of 4 0.40Down
Salivary gland376 74 of 4 0.25Down
Crop919 214 of 4 0.60Down
Midgut877 234 of 4 0.60Down
Tubule484 334 of 4 0.30Down
Hindgut700 104 of 4 0.50Down
Heart485 184 of 4 0.32Down
Fat body716 674 of 4 0.47Down
Ovary2099 404 of 4 1.40Up
Testis428 114 of 4 0.30Down
Male accessory glands1202 274 of 4 0.80Down
Virgin spermatheca394 274 of 4 0.26Down
Mated spermatheca624 254 of 4 0.41Down
Adult carcass441 284 of 4 0.30Down
Larval CNS1581 574 of 4 1.03None
Larval Salivary gland1239 544 of 4 0.81Down
Larval midgut933 604 of 4 0.61Down
Larval tubule718 174 of 4 0.50Down
Larval hindgut1571 894 of 4 1.03None
Larval fat body486 154 of 4 0.30Down
Larval trachea1132 1364 of 4 0.74Down
Larval carcass1710 1094 of 4 1.12None
S2 cells (growing)1785 344 of 4 1.17Up
Whole fly1528 154 of 4

Looking for CG7033-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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