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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7035-RB through 18771 annotations produced 2 hits



cap binding protein 80 (Cbp80):

Annotation Number : CG7035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022942
Gbrowse : chrX:4544053-4552041 (+) // 100.0 //
Probeset : 1636071_a_at
Accessions : protein= NP_524750; /// NP_726938;, nucleotide= NM_080011; /// NM_167012;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006370 // mRNA capping // inferred from electro
FlyMine data for FBgn0022942.
BDGP gene expression has embryonic in situ data for Cbp80: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0022942 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 14 of 4 0.70Down
Head98 34 of 4 0.50Down
Eye74 44 of 4 0.41Down
Thoracicoabdominal ganglion112 24 of 4 0.60Down
Salivary gland154 54 of 4 0.85Down
Crop147 54 of 4 0.80Down
Midgut122 44 of 4 0.70Down
Tubule85 84 of 4 0.50Down
Hindgut113 34 of 4 0.60Down
Heart126 44 of 4 0.70Down
Fat body158 194 of 4 0.87None
Ovary313 44 of 4 1.70Up
Testis19 22 of 4 0.10Down
Male accessory glands168 54 of 4 0.90None
Virgin spermatheca108 104 of 4 0.60Down
Mated spermatheca122 24 of 4 0.67Down
Adult carcass122 34 of 4 0.70Down
Larval CNS328 84 of 4 1.81Up
Larval Salivary gland302 64 of 4 1.66Up
Larval midgut106 54 of 4 0.58Down
Larval tubule184 124 of 4 1.00None
Larval hindgut185 74 of 4 1.02None
Larval fat body125 104 of 4 0.70Down
Larval trachea212 194 of 4 1.17None
Larval carcass239 104 of 4 1.32Up
S2 cells (growing)213 94 of 4 1.18Up
Whole fly182 84 of 4



cap binding protein 80 (Cbp80):

Annotation Number : CG7035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022942
Gbrowse : chrX:4544053-4552292 (+) // 100.0 //
Probeset : 1623101_at
Accessions : protein= NP_524750; /// NP_726938;, nucleotide= NM_080011; /// NM_167012;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006370 // mRNA capping // inferred from electro
FlyMine data for FBgn0022942.
BDGP gene expression has embryonic in situ data for Cbp80: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0022942 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 84 of 4 5.70Up
Head38 64 of 4 2.20Up
Eye16 33 of 4 0.95None
Thoracicoabdominal ganglion77 54 of 4 4.40Up
Salivary gland15 42 of 4 0.85None
Crop29 24 of 4 1.70Up
Midgut6 12 of 4 0.40Down
Tubule15 14 of 4 0.90None
Hindgut12 14 of 4 0.70None
Heart5 12 of 4 0.33Down
Fat body17 04 of 4 0.98None
Ovary31 14 of 4 1.80Up
Testis3 00 of 4 0.20Down
Male accessory glands14 11 of 4 0.80None
Virgin spermatheca12 14 of 4 0.69None
Mated spermatheca15 14 of 4 0.89None
Adult carcass8 22 of 4 0.50Down
Larval CNS154 354 of 4 8.78Up
Larval Salivary gland39 24 of 4 2.26Up
Larval midgut10 23 of 4 0.59None
Larval tubule20 44 of 4 1.20None
Larval hindgut29 24 of 4 1.65Up
Larval fat body20 14 of 4 1.20None
Larval trachea15 44 of 4 0.87None
Larval carcass31 24 of 4 1.79Up
S2 cells (growing)22 24 of 4 1.29None
Whole fly17 14 of 4

Looking for CG7035-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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