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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7039-RA through 18771 annotations produced 1 hits



(CG7039):

Annotation Number : CG7039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030088
Gbrowse : chrX:9001031-9002391 (+) // 100.0 //
Probeset : 1632630_at
Accessions : protein= NP_572526;, nucleotide= NM_132298;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0030088.
Homophila reports that CG7039 is a close match (3e-18) to human gene ARL6;BBS3 (NP_816931), a gene associated with Bardet-Biedl syndrome 1, modifier of, 209900 (3);Bardet-Biedl syndrome 3, 209900 (3).
TRiP has 1 RNAi stocks for FBgn0030088 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 54 of 4 1.10None
Head62 ± 44 of 4 0.80None
Eye55 ± 34 of 4 0.72Down
Thoracicoabdominal ganglion93 ± 64 of 4 1.20None
Salivary gland262 ± 204 of 4 3.43Up
Crop79 ± 44 of 4 1.00None
Midgut62 ± 34 of 4 0.80Down
Tubule131 ± 164 of 4 1.70Up
Hindgut55 ± 14 of 4 0.70Down
Heart42 ± 34 of 4 0.56Down
Fat body77 ± 124 of 4 1.01None
Ovary175 ± 44 of 4 2.30Up
Testis116 ± 44 of 4 1.50Up
Male accessory glands170 ± 114 of 4 2.20Up
Virgin spermatheca107 ± 104 of 4 1.41None
Mated spermatheca120 ± 194 of 4 1.57None
Adult carcass63 ± 64 of 4 0.80None
Larval CNS85 ± 74 of 4 1.12None
Larval Salivary gland207 ± 84 of 4 2.72Up
Larval midgut62 ± 44 of 4 0.81Down
Larval tubule88 ± 24 of 4 1.20Up
Larval hindgut64 ± 14 of 4 0.85Down
Larval fat body66 ± 44 of 4 0.90None
Larval trachea55 ± 124 of 4 0.72Down
Larval carcass54 ± 34 of 4 0.72Down
S2 cells (growing)89 ± 14 of 4 1.17Up
Whole fly76 ± 14 of 4

Looking for CG7039-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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