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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7045-RA through 18771 annotations produced 1 hits



(CG7045):

Annotation Number : CG7045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038978
Gbrowse : chr3R:18317550-18318108 (+) // 100.0 //
Probeset : 1633704_at
Accessions : protein= NP_651055;, nucleotide= NM_142798;
Pathway : 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0038978.
TRiP has 1 RNAi stocks for FBgn0038978 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye2 10 of 4 0.01Down
Thoracicoabdominal ganglion1 10 of 4 0.00Down
Salivary gland5 31 of 4 0.01Down
Crop3 01 of 4 0.00Down
Midgut3 00 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart1 00 of 4 0.00Down
Fat body1 00 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis2557 744 of 4 6.50Up
Male accessory glands7 11 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.00Down
Mated spermatheca2 11 of 4 0.01Down
Adult carcass6 20 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut4 10 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.01Down
Larval fat body695 3574 of 4 1.80None
Larval trachea20 303 of 4 0.05Down
Larval carcass4 12 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.01Down
Whole fly395 464 of 4

Looking for CG7045-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime