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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7046-RA through 18771 annotations produced 1 hits



(CG7046):

Annotation Number : CG7046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038979
Gbrowse : chr3R:18318880-18319470 (+) // 100.0 //
Probeset : 1630819_at
Accessions : protein= NP_001163689; /// NP_651056;, nucleotide= NM_001170218; /// NM_142799;
Pathway : 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0038979.
BDGP gene expression has embryonic in situ data for CG7046: 4 pix of staining in 1 body parts.
BioGrid reports that CG7046 interacts with CG7849 .
TRiP has 1 RNAi stocks for FBgn0038979 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head4 ± 11 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.02Down
Crop4 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body4 ± 20 of 4 0.01Down
Ovary2 ± 10 of 4 0.00Down
Testis2202 ± 624 of 4 7.20Up
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.00Down
Mated spermatheca1 ± 00 of 4 0.00Down
Adult carcass13 ± 61 of 4 0.00Down
Larval CNS1 ± 20 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut3 ± 20 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body497 ± 2464 of 4 1.60None
Larval trachea14 ± 211 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.01Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly305 ± 344 of 4

Looking for CG7046-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime