FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7048-RA through 18771 annotations produced 1 hits

(CG7048):

Annotation Number : CG7048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038976
Gbrowse : chr3R:18312926-18313761 (+) // 100.0 //
Probeset : 1640995_at
Accessions : protein= NP_001163688; /// NP_651053;, nucleotide= NM_001170217; /// NM_142796;
Pathway : 0016272 // prefoldin complex // inferred from sequence or structural similarity /// 0016272 // prefoldin complex // infe
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0038976.
BDGP gene expression has embryonic in situ data for CG7048: 13 pix of staining in 7 body parts.
BioGrid reports that CG7048 interacts with CG7770 CG7417 CG8292 .
VDRC has 3 RNAi stocks for FBgn0038976 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	279 ± 7	4 of 4	0.60	Down
Head	282 ± 8	4 of 4	0.60	Down
Eye	401 ± 15	4 of 4	0.92	None
Thoracicoabdominal ganglion	291 ± 9	4 of 4	0.70	Down
Salivary gland	408 ± 29	4 of 4	0.93	None
Crop	407 ± 17	4 of 4	0.90	None
Midgut	388 ± 16	4 of 4	0.90	None
Tubule	271 ± 7	4 of 4	0.60	Down
Hindgut	307 ± 4	4 of 4	0.70	Down
Heart	331 ± 11	4 of 4	0.76	Down
Fat body	258 ± 13	4 of 4	0.59	Down
Ovary	652 ± 6	4 of 4	1.50	Up
Testis	656 ± 18	4 of 4	1.50	Up
Male accessory glands	456 ± 4	4 of 4	1.00	None
Virgin spermatheca	222 ± 9	4 of 4	0.51	Down
Mated spermatheca	286 ± 18	4 of 4	0.65	Down
Adult carcass	232 ± 15	4 of 4	0.50	Down
Larval CNS	679 ± 24	4 of 4	1.55	Up
Larval Salivary gland	604 ± 35	4 of 4	1.38	Up
Larval midgut	299 ± 17	4 of 4	0.68	Down
Larval tubule	333 ± 9	4 of 4	0.80	Down
Larval hindgut	457 ± 33	4 of 4	1.05	None
Larval fat body	325 ± 10	4 of 4	0.70	Down
Larval trachea	835 ± 126	4 of 4	1.91	Up
Larval carcass	547 ± 49	4 of 4	1.25	None
S2 cells (growing)	507 ± 7	4 of 4	1.16	Up
Whole fly	437 ± 21	4 of 4

Looking for CG7048-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720