Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7050-RA through 18771 annotations produced 1 hits



Neurexin 1 (Nrx-1):

Annotation Number : CG7050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038975
Gbrowse : chr3R:18296206-18309697 (+) // 100.0 //
Probeset : 1625623_at
Accessions : protein= NP_001163687; /// NP_524449;, nucleotide= NM_001170216; /// NM_079725;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
FlyMine data for FBgn0038975.
Homophila reports that CG7050 is a close match (4e-11) to human gene RP39;USH2A (NP_996816), a gene associated with Retinitis pigmentosa-39, 268000 (3);Usher syndrome, type 2A, 276901 (3).
TRiP has 2 RNAi stocks for FBgn0038975 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain844 484 of 426.90Up
Head156 94 of 4 5.00Up
Eye88 114 of 4 2.81Up
Thoracicoabdominal ganglion693 344 of 422.10Up
Salivary gland17 50 of 4 0.55None
Crop98 114 of 4 3.10Up
Midgut20 12 of 4 0.70Down
Tubule7 00 of 4 0.20Down
Hindgut41 34 of 4 1.30Up
Heart76 34 of 4 2.44Up
Fat body16 60 of 4 0.52Down
Ovary2 00 of 4 0.10Down
Testis6 11 of 4 0.20Down
Male accessory glands40 34 of 4 1.30None
Virgin spermatheca14 10 of 4 0.47Down
Mated spermatheca13 41 of 4 0.42Down
Adult carcass27 33 of 4 0.90None
Larval CNS203 124 of 4 6.49Up
Larval Salivary gland5 10 of 4 0.17Down
Larval midgut14 32 of 4 0.45Down
Larval tubule7 21 of 4 0.20Down
Larval hindgut24 24 of 4 0.79None
Larval fat body8 40 of 4 0.30Down
Larval trachea5 30 of 4 0.18Down
Larval carcass8 10 of 4 0.26Down
S2 cells (growing)7 20 of 4 0.24Down
Whole fly31 12 of 4

Looking for CG7050-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime