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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7052-RA through 18771 annotations produced 1 hits



Thiolester containing protein II (TepII):

Annotation Number : CG7052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041182
Gbrowse : chr2L:7693799-7701585 (-) // 100.0 //
Probeset : 1630067_a_at
Accessions : protein= NP_523506; /// NP_723298; /// NP_723299; /// NP_723300; /// NP_723301;, nucleotide= NM_078782; /// NM_164761; /// NM_164762; /// NM_164763; /// NM_164764;
Pathway : engulfment // inferred from mutant phenotype /// 0019731 // antibacterial humoral response // inferred from direct assa
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0041182.
BDGP gene expression has embryonic in situ data for TepII: 24 pix of staining in 6 body parts.
Homophila reports that CG7052 is a close match (1e-43) to human gene C4A;C4S (NP_009224), a gene associated with C4 deficiency (3);[Blood group, Rodgers] (2);{Systemic lupus erythematosus, susceptibility to or protection against}, 152700 (2).
VDRC has 2 RNAi stocks for FBgn0041182 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 104 of 4 1.00None
Head929 1284 of 4 5.30Up
Eye397 704 of 4 2.25Up
Thoracicoabdominal ganglion189 74 of 4 1.10None
Salivary gland438 204 of 4 2.48Up
Crop78 54 of 4 0.40Down
Midgut23 33 of 4 0.10Down
Tubule28 73 of 4 0.20Down
Hindgut235 94 of 4 1.30Up
Heart583 214 of 4 3.31Up
Fat body1150 1044 of 4 6.52Up
Ovary9 11 of 4 0.10Down
Testis60 34 of 4 0.30Down
Male accessory glands12 11 of 4 0.10Down
Virgin spermatheca2285 564 of 412.95Up
Mated spermatheca1682 904 of 4 9.53Up
Adult carcass710 244 of 4 4.00Up
Larval CNS129 44 of 4 0.74None
Larval Salivary gland66 54 of 4 0.38Down
Larval midgut107 164 of 4 0.61Down
Larval tubule41 84 of 4 0.20Down
Larval hindgut539 494 of 4 3.06Up
Larval fat body3535 3254 of 420.00Up
Larval trachea314 624 of 4 1.78Up
Larval carcass171 274 of 4 0.97None
S2 cells (growing)1967 334 of 411.15Up
Whole fly176 184 of 4

Looking for CG7052-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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