Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7056-RA through 18771 annotations produced 1 hits



(CG7056):

Annotation Number : CG7056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038852
Gbrowse : chr3R:16902635-16906252 (-) // 100.0 //
Probeset : 1628850_at
Accessions : protein= NP_650938;, nucleotide= NM_142681;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from sequen
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0038852.
Homophila reports that CG7056 is a close match (6e-16) to human gene (NP_002720), a gene associated with .
BioGrid reports that CG7056 interacts with CG7937 CG7576 CG7823 .
VDRC has 3 RNAi stocks for FBgn0038852 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head2 00 of 4 0.40None
Eye1 00 of 4 0.20None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland3 10 of 4 0.64None
Crop4 10 of 4 0.80None
Midgut3 10 of 4 0.70None
Tubule2 00 of 4 0.50Down
Hindgut2 10 of 4 0.50None
Heart4 20 of 4 0.87None
Fat body2 10 of 4 0.49None
Ovary2 00 of 4 0.50None
Testis1 00 of 4 0.30None
Male accessory glands3 00 of 4 0.60None
Virgin spermatheca2 10 of 4 0.54None
Mated spermatheca4 20 of 4 0.78None
Adult carcass2 00 of 4 0.40None
Larval CNS1 00 of 4 0.20None
Larval Salivary gland3 10 of 4 0.72None
Larval midgut46 43 of 4 8.83Up
Larval tubule1 00 of 4 0.30None
Larval hindgut1 00 of 4 0.32None
Larval fat body3 00 of 4 0.60None
Larval trachea2 20 of 4 0.50None
Larval carcass4 10 of 4 0.75None
S2 cells (growing)88 24 of 416.64Up
Whole fly5 20 of 4

Looking for CG7056-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime