FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7073-RA through 18771 annotations produced 1 hits

sar1 (sar1):

Annotation Number : CG7073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038947
Gbrowse : chr3R:18182396-18185923 (+) // 100.0 //
Probeset : 1623901_s_at
Accessions : protein= NP_651025; /// NP_732717; /// NP_732718; /// NP_732719; /// NP_996265;, nucleotide= NM_142768; /// NM_170000; /// NM_170001; /// NM_170002; /// NM_206542;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from el
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0038947.
BDGP gene expression has embryonic in situ data for sar1: 11 pix of staining in 17 body parts.
Homophila reports that CG7073 is a close match (3e-12) to human gene ARL13B;ARL2L1;JBTS8 (NP_878899), a gene associated with Joubert syndrome, 612291 (3).
BioGrid reports that CG7073 interacts with CG7285 .
TRiP has 1 RNAi stocks for FBgn0038947 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038947 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	487 ± 14	4 of 4	0.60	Down
Head	983 ± 32	4 of 4	1.20	Up
Eye	1484 ± 59	4 of 4	1.79	Up
Thoracicoabdominal ganglion	522 ± 13	4 of 4	0.60	Down
Salivary gland	2729 ± 93	4 of 4	3.29	Up
Crop	1374 ± 25	4 of 4	1.70	Up
Midgut	1415 ± 15	4 of 4	1.70	Up
Tubule	1216 ± 22	4 of 4	1.50	Up
Hindgut	1292 ± 9	4 of 4	1.60	Up
Heart	3169 ± 143	4 of 4	3.82	Up
Fat body	2451 ± 84	4 of 4	2.95	Up
Ovary	586 ± 8	4 of 4	0.70	Down
Testis	595 ± 19	4 of 4	0.70	Down
Male accessory glands	2080 ± 91	4 of 4	2.50	Up
Virgin spermatheca	944 ± 41	4 of 4	1.14	None
Mated spermatheca	829 ± 33	4 of 4	1.00	None
Adult carcass	1771 ± 64	4 of 4	2.10	Up
Larval CNS	778 ± 48	4 of 4	0.94	None
Larval Salivary gland	2664 ± 96	4 of 4	3.21	Up
Larval midgut	1034 ± 26	4 of 4	1.25	Up
Larval tubule	1512 ± 30	4 of 4	1.80	Up
Larval hindgut	854 ± 17	4 of 4	1.03	None
Larval fat body	1078 ± 69	4 of 4	1.30	Up
Larval trachea	1468 ± 95	4 of 4	1.77	Up
Larval carcass	967 ± 10	4 of 4	1.17	Up
S2 cells (growing)	1513 ± 27	4 of 4	1.82	Up
Whole fly	830 ± 19	4 of 4

Looking for CG7073-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720