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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7076-RA through 18771 annotations produced 1 hits



CG7076 (Cpr66Cb):

Annotation Number : CG7076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035875
Gbrowse : chr3L:8330686-8331248 (+) // 97.96 //
Probeset : 1631774_at
Accessions : protein= NP_648209;, nucleotide= NM_139952;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0035875.
BioGrid reports that CG7076 interacts with CG8390 .
VDRC has 3 RNAi stocks for FBgn0035875 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head10 ± 50 of 4 1.20None
Eye10 ± 23 of 4 1.24None
Thoracicoabdominal ganglion7 ± 20 of 4 0.80None
Salivary gland10 ± 50 of 4 1.26None
Crop2 ± 00 of 4 0.30Down
Midgut9 ± 20 of 4 1.20None
Tubule4 ± 00 of 4 0.50Down
Hindgut9 ± 30 of 4 1.10None
Heart3 ± 10 of 4 0.45None
Fat body10 ± 60 of 4 1.23None
Ovary5 ± 10 of 4 0.70None
Testis32 ± 44 of 4 3.80Up
Male accessory glands9 ± 40 of 4 1.10None
Virgin spermatheca26 ± 24 of 4 3.06Up
Mated spermatheca19 ± 12 of 4 2.28Up
Adult carcass10 ± 20 of 4 1.30None
Larval CNS6 ± 30 of 4 0.78None
Larval Salivary gland13 ± 21 of 4 1.53None
Larval midgut11 ± 20 of 4 1.30None
Larval tubule7 ± 10 of 4 0.80None
Larval hindgut44 ± 104 of 4 5.28Up
Larval fat body15 ± 12 of 4 1.90Up
Larval trachea9 ± 32 of 4 1.12None
Larval carcass29 ± 24 of 4 3.42Up
S2 cells (growing)12 ± 10 of 4 1.46None
Whole fly8 ± 12 of 4

Looking for CG7076-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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