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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7080-RA through 18771 annotations produced 1 hits


Annotation Number : CG7080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038941
Gbrowse : chr3R:18155038-18156274 (+) // 100.0 //
Probeset : 1633952_at
Accessions : protein= NP_651019;, nucleotide= NM_142762;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038941.
BDGP gene expression has embryonic in situ data for CG7080: 12 pix of staining in 6 body parts.
BioGrid reports that CG7080 interacts with CG8404 CG9036 .
VDRC has 3 RNAi stocks for FBgn0038941 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.50None
Head2 00 of 4 0.50None
Eye1 00 of 4 0.26None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland6 20 of 4 1.42None
Crop8 20 of 4 1.70None
Midgut3 00 of 4 0.70None
Tubule4 00 of 4 0.90Down
Hindgut1 00 of 4 0.40None
Heart4 10 of 4 1.03None
Fat body11 20 of 4 2.46None
Ovary2 10 of 4 0.50None
Testis2 00 of 4 0.50None
Male accessory glands3 00 of 4 0.70None
Virgin spermatheca8 20 of 4 1.78None
Mated spermatheca9 10 of 4 2.15None
Adult carcass6 30 of 4 1.30None
Larval CNS1 10 of 4 0.38None
Larval Salivary gland6 30 of 4 1.29None
Larval midgut15 10 of 4 3.39Up
Larval tubule6 00 of 4 1.40None
Larval hindgut2 00 of 4 0.64None
Larval fat body2 00 of 4 0.40None
Larval trachea5 00 of 4 1.24None
Larval carcass10 30 of 4 2.29None
S2 cells (growing)1 00 of 4 0.38None
Whole fly4 20 of 4

Looking for CG7080-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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