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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7084-RB through 18771 annotations produced 1 hits



(CG7084):

Annotation Number : CG7084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038938
Gbrowse : chr3R:18124537-18129553 (+) // 100.0 //
Probeset : 1630335_s_at
Accessions : protein= NP_651016; /// NP_732707;, nucleotide= NM_142759; /// NM_169999;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0038938.
BDGP gene expression has embryonic in situ data for CG7084: 4 pix of staining in 1 body parts.
Homophila reports that CG7084 is a close match (3e-18) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
TRiP has 1 RNAi stocks for FBgn0038938 available for purchase.
VDRC has 4 RNAi stocks for FBgn0038938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain431 ± 84 of 4 2.10Up
Head220 ± 54 of 4 1.10None
Eye249 ± 84 of 4 1.20None
Thoracicoabdominal ganglion406 ± 204 of 4 2.00Up
Salivary gland13 ± 30 of 4 0.06Down
Crop6 ± 20 of 4 0.00Down
Midgut116 ± 54 of 4 0.60Down
Tubule6118 ± 2094 of 429.50Up
Hindgut316 ± 234 of 4 1.50Up
Heart8 ± 20 of 4 0.04Down
Fat body18 ± 181 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands14 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass24 ± 82 of 4 0.10Down
Larval CNS94 ± 234 of 4 0.46Down
Larval Salivary gland5 ± 20 of 4 0.03Down
Larval midgut46 ± 13 of 4 0.22Down
Larval tubule1401 ± 2874 of 4 6.80Up
Larval hindgut52 ± 44 of 4 0.25Down
Larval fat body4 ± 00 of 4 0.00Down
Larval trachea9 ± 91 of 4 0.04Down
Larval carcass8 ± 30 of 4 0.04Down
S2 cells (growing)12 ± 10 of 4 0.06Down
Whole fly207 ± 204 of 4

Looking for CG7084-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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