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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7092-RA through 18771 annotations produced 1 hits



dynein-related heavy chain polypeptide (Dhc16F):

Annotation Number : CG7092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013809
Gbrowse : chrX:17958634-17972505 (+) // 100.0 //
Probeset : 1637895_at
Accessions : protein= NP_523394;, nucleotide= NM_078670;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electro
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005858 // axonemal dynein complex // inferred from
FlyMine data for FBgn0013809.
BDGP gene expression has embryonic in situ data for Dhc16F: 4 pix of staining in 1 body parts.
Homophila reports that CG7092 is a close match (0) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 1 RNAi stocks for FBgn0013809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 20 of 4 0.20Down
Head8 ± 10 of 4 0.40Down
Eye6 ± 10 of 4 0.34Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland12 ± 30 of 4 0.65None
Crop12 ± 10 of 4 0.70None
Midgut21 ± 20 of 4 1.20None
Tubule9 ± 10 of 4 0.50Down
Hindgut10 ± 20 of 4 0.50Down
Heart5 ± 20 of 4 0.32Down
Fat body12 ± 30 of 4 0.67None
Ovary8 ± 00 of 4 0.40Down
Testis163 ± 24 of 4 8.70Up
Male accessory glands12 ± 40 of 4 0.70None
Virgin spermatheca12 ± 10 of 4 0.66None
Mated spermatheca5 ± 10 of 4 0.29Down
Adult carcass10 ± 60 of 4 0.60None
Larval CNS2 ± 20 of 4 0.15Down
Larval Salivary gland17 ± 10 of 4 0.92None
Larval midgut21 ± 30 of 4 1.12None
Larval tubule7 ± 20 of 4 0.40Down
Larval hindgut10 ± 10 of 4 0.56Down
Larval fat body26 ± 22 of 4 1.40None
Larval trachea5 ± 30 of 4 0.27Down
Larval carcass6 ± 20 of 4 0.34Down
S2 cells (growing)7 ± 10 of 4 0.38Down
Whole fly18 ± 21 of 4

Looking for CG7092-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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