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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7098-RA through 18771 annotations produced 1 hits



diskette (dik):

Annotation Number : CG7098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030891
Gbrowse : chrX:17979790-17982454 (+) // 100.0 //
Probeset : 1633730_at
Accessions : protein= NP_523395;, nucleotide= NM_078671;
Pathway : 0000123 // histone acetyltransferase complex // inferred from sequence or structural similarity /// 0005671 // Ada2/Gcn5
Interpro : 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone
FlyMine data for FBgn0030891.
BDGP gene expression has embryonic in situ data for dik: 9 pix of staining in 13 body parts.
BioGrid reports that CG7098 interacts with CG7230 CG9638 CG8539 CG7704 CG6474 CG2859 CG3169 CG9638 CG33520 .
TRiP has 2 RNAi stocks for FBgn0030891 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030891 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain306 74 of 4 1.40Up
Head225 64 of 4 1.00None
Eye275 64 of 4 1.23Up
Thoracicoabdominal ganglion261 84 of 4 1.20Up
Salivary gland225 74 of 4 1.01None
Crop188 74 of 4 0.80Down
Midgut169 34 of 4 0.80Down
Tubule202 124 of 4 0.90None
Hindgut155 64 of 4 0.70Down
Heart117 54 of 4 0.53Down
Fat body126 124 of 4 0.56Down
Ovary528 94 of 4 2.40Up
Testis41 14 of 4 0.20Down
Male accessory glands164 104 of 4 0.70Down
Virgin spermatheca276 164 of 4 1.23Up
Mated spermatheca283 104 of 4 1.26Up
Adult carcass151 34 of 4 0.70Down
Larval CNS463 294 of 4 2.07Up
Larval Salivary gland278 44 of 4 1.24Up
Larval midgut213 64 of 4 0.95None
Larval tubule276 134 of 4 1.20Up
Larval hindgut187 104 of 4 0.84Down
Larval fat body181 144 of 4 0.80None
Larval trachea208 74 of 4 0.93None
Larval carcass225 174 of 4 1.01None
S2 cells (growing)470 84 of 4 2.10Up
Whole fly223 94 of 4

Looking for CG7098-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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