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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7099-RA through 18771 annotations produced 1 hits


Annotation Number : CG7099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032517
Gbrowse : chr2L:13387635-13393962 (+) // 100.0 //
Probeset : 1628132_at
Accessions : protein= NP_609648;, nucleotide= NM_135804;
FlyMine data for FBgn0032517.
VDRC has 3 RNAi stocks for FBgn0032517 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 24 of 4 1.60Up
Head18 04 of 4 0.70None
Eye23 04 of 4 0.96None
Thoracicoabdominal ganglion41 44 of 4 1.70Up
Salivary gland25 31 of 4 1.05None
Crop23 44 of 4 1.00None
Midgut18 12 of 4 0.70None
Tubule25 03 of 4 1.10Up
Hindgut22 14 of 4 0.90None
Heart13 14 of 4 0.56Down
Fat body15 23 of 4 0.65None
Ovary65 34 of 4 2.70Up
Testis21 14 of 4 0.90None
Male accessory glands38 34 of 4 1.60Up
Virgin spermatheca17 14 of 4 0.74None
Mated spermatheca15 14 of 4 0.63None
Adult carcass17 30 of 4 0.70None
Larval CNS52 14 of 4 2.20Up
Larval Salivary gland24 34 of 4 1.01None
Larval midgut14 13 of 4 0.59Down
Larval tubule23 14 of 4 1.00None
Larval hindgut25 34 of 4 1.04None
Larval fat body33 33 of 4 1.40None
Larval trachea31 44 of 4 1.30None
Larval carcass22 14 of 4 0.93None
S2 cells (growing)62 34 of 4 2.60Up
Whole fly24 34 of 4

Looking for CG7099-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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