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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7101-RA through 18771 annotations produced 1 hits



(CG7101):

Annotation Number : CG7101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030963
Gbrowse : chrX:18724638-18726158 (+) // 100.0 //
Probeset : 1639310_at
Accessions : protein= NP_573329;, nucleotide= NM_133101;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030963.
Homophila reports that CG7101 is a close match (9e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
VDRC has 3 RNAi stocks for FBgn0030963 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 34 of 4 0.30Down
Head25 ± 12 of 4 0.20Down
Eye41 ± 24 of 4 0.31Down
Thoracicoabdominal ganglion45 ± 24 of 4 0.30Down
Salivary gland14 ± 40 of 4 0.11Down
Crop32 ± 32 of 4 0.20Down
Midgut16 ± 42 of 4 0.10Down
Tubule19 ± 22 of 4 0.10Down
Hindgut26 ± 10 of 4 0.20Down
Heart19 ± 33 of 4 0.15Down
Fat body21 ± 30 of 4 0.16Down
Ovary255 ± 84 of 4 1.90Up
Testis33 ± 04 of 4 0.30Down
Male accessory glands34 ± 31 of 4 0.30Down
Virgin spermatheca33 ± 04 of 4 0.25Down
Mated spermatheca41 ± 24 of 4 0.32Down
Adult carcass26 ± 00 of 4 0.20Down
Larval CNS77 ± 154 of 4 0.59Down
Larval Salivary gland63 ± 24 of 4 0.48Down
Larval midgut16 ± 23 of 4 0.12Down
Larval tubule17 ± 01 of 4 0.10Down
Larval hindgut19 ± 10 of 4 0.15Down
Larval fat body16 ± 50 of 4 0.10Down
Larval trachea53 ± 114 of 4 0.41Down
Larval carcass21 ± 20 of 4 0.16Down
S2 cells (growing)75 ± 14 of 4 0.57Down
Whole fly132 ± 44 of 4

Looking for CG7101-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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