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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7103-RA through 18771 annotations produced 1 hits



PDGF- and VEGF-related factor 1 (Pvf1):

Annotation Number : CG7103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030964
Gbrowse : chrX:18726736-18736934 (+) // 100.0 //
Probeset : 1631638_at
Accessions : protein= NP_001162792; /// NP_523407;, nucleotide= NM_001169321; /// NM_078683;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred
Interpro : 0005102 // receptor binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from seque
FlyMine data for FBgn0030964.
BDGP gene expression has embryonic in situ data for Pvf1: 15 pix of staining in 6 body parts.
BioGrid reports that CG7103 interacts with CG10079 CG13780 CG31629 CG8222 CG8222 CG13109 CG8222 .
TRiP has 1 RNAi stocks for FBgn0030964 available for purchase.
VDRC has 4 RNAi stocks for FBgn0030964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 14 of 4 0.10Down
Head53 14 of 4 0.50Down
Eye25 24 of 4 0.22Down
Thoracicoabdominal ganglion9 04 of 4 0.10Down
Salivary gland1159 344 of 4 9.99Up
Crop146 44 of 4 1.30Up
Midgut166 184 of 4 1.40None
Tubule310 314 of 4 2.70Up
Hindgut127 34 of 4 1.10None
Heart10 14 of 4 0.09Down
Fat body17 24 of 4 0.15Down
Ovary254 24 of 4 2.20Up
Testis63 44 of 4 0.50Down
Male accessory glands520 214 of 4 4.50Up
Virgin spermatheca38 24 of 4 0.33Down
Mated spermatheca45 24 of 4 0.39Down
Adult carcass58 44 of 4 0.50Down
Larval CNS5 13 of 4 0.05Down
Larval Salivary gland222 124 of 4 1.92Up
Larval midgut51 84 of 4 0.45Down
Larval tubule265 64 of 4 2.30Up
Larval hindgut67 54 of 4 0.58Down
Larval fat body11 31 of 4 0.10Down
Larval trachea128 44 of 4 1.11None
Larval carcass84 144 of 4 0.72None
S2 cells (growing)784 484 of 4 6.76Up
Whole fly116 54 of 4

Looking for CG7103-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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