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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7106-RA through 18771 annotations produced 1 hits



Lectin28C /// rhodopsin (lectin-28C /// ninaE):

Annotation Number : CG7106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040099
Gbrowse : chr2L:7857089-7857931 (+) // 100.0 //
Probeset : 1634786_at
Accessions : protein= NP_524407; /// NP_652636;, nucleotide= NM_079683; /// NM_144379;
Pathway : 0005767 // secondary lysosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct a
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0040099.
VDRC has 2 RNAi stocks for FBgn0040099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 24 of 4 0.40None
Head224 404 of 4 3.50Up
Eye96 194 of 4 1.49None
Thoracicoabdominal ganglion15 24 of 4 0.20None
Salivary gland21 21 of 4 0.34None
Crop8 13 of 4 0.10None
Midgut32 54 of 4 0.50None
Tubule4 00 of 4 0.10Down
Hindgut25 54 of 4 0.40None
Heart1331 424 of 420.53Up
Fat body502 1544 of 4 7.74Up
Ovary2 00 of 4 0.00None
Testis7 02 of 4 0.10None
Male accessory glands14 22 of 4 0.20None
Virgin spermatheca358 454 of 4 5.53Up
Mated spermatheca214 394 of 4 3.31Up
Adult carcass243 374 of 4 3.70Up
Larval CNS2 10 of 4 0.05None
Larval Salivary gland20 34 of 4 0.32None
Larval midgut105 184 of 4 1.63None
Larval tubule18 34 of 4 0.30None
Larval hindgut20 54 of 4 0.31None
Larval fat body642 844 of 4 9.90Up
Larval trachea17 34 of 4 0.26None
Larval carcass168 174 of 4 2.60Up
S2 cells (growing)228 154 of 4 3.53Up
Whole fly64 294 of 4

Looking for CG7106-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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