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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7107-RA through 18771 annotations produced 1 hits



troponin T (up):

Annotation Number : CG7107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004169
Gbrowse : chrX:13487609-13496536 (-) // 100.0 //
Probeset : 1630261_a_at
Accessions : protein= NP_001014737; /// NP_001014738; /// NP_001014739; /// NP_001162741; /// NP_001162742; /// NP_001162743; /// NP_001162744; /// NP_525088; /// NP_727718; /// NP_727719;, nucleotide= NM_001014737; /// NM_001014738; /// NM_001014739; /// NM_001169270; /// NM_001169271; /// NM_001169272; /// NM_001169273; /// NM_080349; /// NM_167375; /// NM_167376;
Pathway : 0005861 // troponin complex // inferred from sequence or structural similarity /// 0005861 // troponin complex // non-tr
Interpro : 0005509 // calcium ion binding // inferred from direct assay /// 0005523 // tropomyosin binding // inferred from sequenc
FlyMine data for FBgn0004169.
BDGP gene expression has embryonic in situ data for up: 32 pix of staining in 3 body parts.
BioGrid reports that CG7107 interacts with CG17927 CG17927 CG4843 .
TRiP has 2 RNAi stocks for FBgn0004169 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 24 of 4 0.00Down
Head269 224 of 4 0.70Down
Eye63 174 of 4 0.16Down
Thoracicoabdominal ganglion20 34 of 4 0.10Down
Salivary gland11 10 of 4 0.03Down
Crop3310 2184 of 4 8.50Up
Midgut227 84 of 4 0.60Down
Tubule39 53 of 4 0.10Down
Hindgut1582 274 of 4 4.10Up
Heart1692 714 of 4 4.35Up
Fat body42 134 of 4 0.11Down
Ovary27 34 of 4 0.10Down
Testis82 74 of 4 0.20Down
Male accessory glands319 174 of 4 0.80None
Virgin spermatheca37 14 of 4 0.10Down
Mated spermatheca65 64 of 4 0.17Down
Adult carcass902 1074 of 4 2.30Up
Larval CNS7 31 of 4 0.02Down
Larval Salivary gland7 11 of 4 0.02Down
Larval midgut247 114 of 4 0.64Down
Larval tubule19 14 of 4 0.00Down
Larval hindgut1837 854 of 4 4.72Up
Larval fat body9 10 of 4 0.00Down
Larval trachea425 2594 of 4 1.09None
Larval carcass3480 2964 of 4 8.95Up
S2 cells (growing)0 00 of 4 0.00Down
Whole fly389 314 of 4

Looking for CG7107-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime