Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7120-RA through 18771 annotations produced 1 hits



(CG7120):

Annotation Number : CG7120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035888
Gbrowse : chr3L:8391157-8395078 (+) // 100.0 //
Probeset : 1628861_at
Accessions : protein= NP_648218;, nucleotide= NM_139961;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0035888.
VDRC has 2 RNAi stocks for FBgn0035888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 64 of 4 4.00Up
Head49 44 of 4 1.70Up
Eye35 34 of 4 1.21None
Thoracicoabdominal ganglion81 54 of 4 2.80Up
Salivary gland10 50 of 4 0.35Down
Crop21 40 of 4 0.70None
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut91 64 of 4 3.10Up
Heart58 34 of 4 1.98Up
Fat body6 30 of 4 0.22Down
Ovary30 24 of 4 1.00None
Testis77 24 of 4 2.60Up
Male accessory glands16 10 of 4 0.60Down
Virgin spermatheca4 20 of 4 0.14Down
Mated spermatheca3 00 of 4 0.12Down
Adult carcass35 23 of 4 1.20None
Larval CNS34 54 of 4 1.17None
Larval Salivary gland0 00 of 4 0.02Down
Larval midgut46 142 of 4 1.55None
Larval tubule1 00 of 4 0.00Down
Larval hindgut27 33 of 4 0.92None
Larval fat body18 30 of 4 0.60Down
Larval trachea1 00 of 4 0.06Down
Larval carcass3 10 of 4 0.13Down
S2 cells (growing)70 34 of 4 2.37Up
Whole fly29 23 of 4

Looking for CG7120-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime