FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7120-RA through 18771 annotations produced 1 hits

(CG7120):

Annotation Number : CG7120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035888
Gbrowse : chr3L:8391157-8395078 (+) // 100.0 //
Probeset : 1628861_at
Accessions : protein= NP_648218;, nucleotide= NM_139961;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0035888.
VDRC has 2 RNAi stocks for FBgn0035888 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 6	4 of 4	4.00	Up
Head	49 ± 4	4 of 4	1.70	Up
Eye	35 ± 3	4 of 4	1.21	None
Thoracicoabdominal ganglion	81 ± 5	4 of 4	2.80	Up
Salivary gland	10 ± 5	0 of 4	0.35	Down
Crop	21 ± 4	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	91 ± 6	4 of 4	3.10	Up
Heart	58 ± 3	4 of 4	1.98	Up
Fat body	6 ± 3	0 of 4	0.22	Down
Ovary	30 ± 2	4 of 4	1.00	None
Testis	77 ± 2	4 of 4	2.60	Up
Male accessory glands	16 ± 1	0 of 4	0.60	Down
Virgin spermatheca	4 ± 2	0 of 4	0.14	Down
Mated spermatheca	3 ± 0	0 of 4	0.12	Down
Adult carcass	35 ± 2	3 of 4	1.20	None
Larval CNS	34 ± 5	4 of 4	1.17	None
Larval Salivary gland	0 ± 0	0 of 4	0.02	Down
Larval midgut	46 ± 14	2 of 4	1.55	None
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	27 ± 3	3 of 4	0.92	None
Larval fat body	18 ± 3	0 of 4	0.60	Down
Larval trachea	1 ± 0	0 of 4	0.06	Down
Larval carcass	3 ± 1	0 of 4	0.13	Down
S2 cells (growing)	70 ± 3	4 of 4	2.37	Up
Whole fly	29 ± 2	3 of 4

Looking for CG7120-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720