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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7128-RA through 18771 annotations produced 1 hits



prodos (Taf8):

Annotation Number : CG7128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022724
Gbrowse : chrX:17996004-17997517 (+) // 100.0 //
Probeset : 1623546_at
Accessions : protein= NP_523397;, nucleotide= NM_078673;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0022724.
BDGP gene expression has embryonic in situ data for Taf8: 4 pix of staining in 1 body parts.
BioGrid reports that CG7128 interacts with CG9375 CG9375 .
VDRC has 3 RNAi stocks for FBgn0022724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 14 of 4 0.50Down
Head23 24 of 4 0.30Down
Eye17 22 of 4 0.23Down
Thoracicoabdominal ganglion26 23 of 4 0.30Down
Salivary gland36 60 of 4 0.46Down
Crop45 24 of 4 0.60Down
Midgut22 02 of 4 0.30Down
Tubule14 01 of 4 0.20Down
Hindgut21 12 of 4 0.30Down
Heart20 24 of 4 0.26Down
Fat body24 44 of 4 0.31Down
Ovary189 64 of 4 2.40Up
Testis67 34 of 4 0.90None
Male accessory glands50 43 of 4 0.60Down
Virgin spermatheca30 34 of 4 0.39Down
Mated spermatheca27 14 of 4 0.34Down
Adult carcass18 21 of 4 0.20Down
Larval CNS71 14 of 4 0.90Down
Larval Salivary gland75 14 of 4 0.96None
Larval midgut23 11 of 4 0.30Down
Larval tubule28 14 of 4 0.40Down
Larval hindgut23 21 of 4 0.30Down
Larval fat body36 34 of 4 0.50Down
Larval trachea51 84 of 4 0.65Down
Larval carcass35 34 of 4 0.45Down
S2 cells (growing)100 34 of 4 1.27Up
Whole fly78 24 of 4

Looking for CG7128-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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