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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7131-RA through 18771 annotations produced 1 hits



(CG7131):

Annotation Number : CG7131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038598
Gbrowse : chr3R:14112336-14114499 (-) // 100.0 //
Probeset : 1628953_at
Accessions : protein= NP_650706; /// NP_996232;, nucleotide= NM_142449; /// NM_206510;
FlyMine data for FBgn0038598.
BDGP gene expression has embryonic in situ data for CG7131: 4 pix of staining in 1 body parts.
BioGrid reports that CG7131 interacts with CG7757 .
VDRC has 2 RNAi stocks for FBgn0038598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.10Down
Head9 ± 10 of 4 0.10Down
Eye8 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion12 ± 14 of 4 0.10Down
Salivary gland26 ± 43 of 4 0.15Down
Crop10 ± 12 of 4 0.10Down
Midgut9 ± 21 of 4 0.10Down
Tubule19 ± 13 of 4 0.10Down
Hindgut11 ± 14 of 4 0.10Down
Heart17 ± 22 of 4 0.10Down
Fat body7 ± 10 of 4 0.04Down
Ovary6 ± 02 of 4 0.00Down
Testis1629 ± 194 of 4 9.30Up
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca12 ± 32 of 4 0.07Down
Mated spermatheca14 ± 13 of 4 0.08Down
Adult carcass16 ± 23 of 4 0.10Down
Larval CNS9 ± 14 of 4 0.06Down
Larval Salivary gland5 ± 20 of 4 0.03Down
Larval midgut9 ± 11 of 4 0.05Down
Larval tubule15 ± 13 of 4 0.10Down
Larval hindgut7 ± 12 of 4 0.04Down
Larval fat body181 ± 1014 of 4 1.00None
Larval trachea14 ± 64 of 4 0.08Down
Larval carcass12 ± 03 of 4 0.07Down
S2 cells (growing)8 ± 04 of 4 0.05Down
Whole fly174 ± 114 of 4

Looking for CG7131-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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