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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7138-RA through 18771 annotations produced 1 hits



r2d2 (r2d2):

Annotation Number : CG7138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031951
Gbrowse : chr2L:7800188-7802008 (+) // 100.0 //
Probeset : 1634859_at
Accessions : protein= NP_001162903; /// NP_609152;, nucleotide= NM_001169432; /// NM_135308;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred fro
FlyMine data for FBgn0031951.
TRiP has 1 RNAi stocks for FBgn0031951 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031951 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 54 of 4 0.90None
Head64 74 of 4 0.70None
Eye19 24 of 4 0.23Down
Thoracicoabdominal ganglion64 24 of 4 0.80None
Salivary gland103 74 of 4 1.20None
Crop108 84 of 4 1.30None
Midgut84 24 of 4 1.00None
Tubule90 24 of 4 1.10None
Hindgut70 34 of 4 0.80None
Heart26 34 of 4 0.31Down
Fat body128 44 of 4 1.49Up
Ovary258 34 of 4 3.00Up
Testis37 14 of 4 0.40Down
Male accessory glands115 84 of 4 1.30Up
Virgin spermatheca97 34 of 4 1.13None
Mated spermatheca104 44 of 4 1.21None
Adult carcass58 64 of 4 0.70Down
Larval CNS183 404 of 4 2.13Up
Larval Salivary gland152 164 of 4 1.78Up
Larval midgut99 24 of 4 1.15None
Larval tubule104 54 of 4 1.20None
Larval hindgut109 34 of 4 1.27Up
Larval fat body62 24 of 4 0.70Down
Larval trachea35 34 of 4 0.41Down
Larval carcass79 74 of 4 0.92None
S2 cells (growing)78 74 of 4 0.91None
Whole fly86 74 of 4

Looking for CG7138-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime